Browse Element(s) Details


OsAffx.2820.1.S1_at

Description tigr:9630.m03008
TID=OsAffx.2820.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3183011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31290Os.12396.1.S1_at8/112+18764089..18772150Mei2, putative, expressed
LOC_Os02g31300NANA2+18772740..18773441UBX domain containing protein
LOC_Os02g31310OsAffx.5798.1.S1_at1/112+18776532..18779875retrotransposon protein, putative, LINE subclass
LOC_Os02g31320OsAffx.8589.1.S1_at1/112+18783935..18786919transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g31330Os.39476.1.S1_at3/112+18788106..18789189transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g31830OsAffx.2820.1.S1_at11/112+18791230..18797143hypothetical protein
LOC_Os02g31840Os.8855.1.S1_at11/112+18799627..18800720expressed protein
LOC_Os02g31850OsAffx.25860.3.S1_at11/112+18807205..18810136transposon protein, putative, unclassified
LOC_Os02g31860Os.14382.1.S1_at8/112+18812264..18815504expressed protein
LOC_Os02g31867Os.15317.1.A1_at11/112+18818690..18820281expressed protein
LOC_Os02g31874Os.11825.1.S1_at11/112+18821158..18825876expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2820.1.S1_at--771--7771Chr02:18797078..18797102 (25 bp)
GGTCCATGGGCCTCAGGAGTCCACT
LOC_Os02g31830
OsAffx.2820.1.S1_at--994--1351Chr02:18796941..18796965 (25 bp)
AGAGCCGCGCCCATGAACGGGCACG
LOC_Os02g31830
OsAffx.2820.1.S1_at--640--4331Chr02:18796931..18796955 (25 bp)
CCATGAACGGGCACGTGAGCAGCCC
LOC_Os02g31830
OsAffx.2820.1.S1_at--235--4151Chr02:18796894..18796918 (25 bp)
CGCGGCGCCGATAGATCGAGCTCCG
LOC_Os02g31830
OsAffx.2820.1.S1_at--779--2791Chr02:18796837..18796861 (25 bp)
AAGATCGGCGAAGATTCTTCTTCTC
LOC_Os02g31830
OsAffx.2820.1.S1_at--1111--10571Chr02:18796817..18796841 (25 bp)
TTCTCCGGCACCACCTGATGATCGG
LOC_Os02g31830
OsAffx.2820.1.S1_at--290--8851Chr02:18796712..18796823 (25 bp)
TGATCGGGAACAGGCGCCAAGGAAA
LOC_Os02g31830
OsAffx.2820.1.S1_at--254--7711Chr02:18796683..18796707 (25 bp)
GGAGGAAGAAGTCCGATTCCCCGAT
LOC_Os02g31830
OsAffx.2820.1.S1_at--1133--4031Chr02:18796670..18796694 (25 bp)
CGATTCCCCGATGAAGTTTCTCAGG
LOC_Os02g31830
OsAffx.2820.1.S1_at--1020--9631Chr02:18796650..18796674 (25 bp)
TCAGGAGTAGCATTCTTGCGATTCA
LOC_Os02g31830
OsAffx.2820.1.S1_at--827--9571Chr02:18796637..18796661 (25 bp)
TCTTGCGATTCATGGCTACGCCAAG
LOC_Os02g31830
Target Sequence 
GGTCCATGGGCCTCAGGAGTCCACTTCCAGCGCCGCCGCCGCCGCCGCCGCCGATGCTTCGATCCCCGCGCCACCCGAGG
GCGCCGGCGATGTCTCTCCGCCGTCACCGCCGCCGCCGCCCCCTCCCTCGTCCGTCCAGAGCCGCGCCCATGAACGGGCA
CGTGAGCAGCCCGGAGATGGAGGCCGCGGCGCCGATAGATCGAGCTCCGCCGCTGCGGCGGTCGACCGGAAGGGGAAGAA
GAAGATCGGCGAAGATTCTTCTTCTCCGGCACCACCTGATGATCGGGAACAGGCGCCAAGGAAAGAGGGGAGGAAGAAGT
CCGATTCCCCGATGAAGTTTCTCAGGAGTAGCATTCTTGCGATTCATGGCTACGCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2820.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis