Browse Element(s) Details


Os.12396.1.S1_at

Description gb:AK121247.1
DB_XREF= gi:37990870
TID=Os.12396.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12396 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-046-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099P19, full insert sequence.
FL= gb:AK121247.1 gb:AK062177.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g312908/11Mei2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31280OsAffx.12912.1.S1_at4/112+18740846..18741956hypothetical protein
LOC_Os02g31280OsAffx.12308.1.S1_at2/112+18740846..18741956hypothetical protein
LOC_Os02g31290Os.12396.1.S1_at8/112+18764089..18772150Mei2, putative, expressed
LOC_Os02g31300NANA2+18772740..18773441UBX domain containing protein
LOC_Os02g31310OsAffx.5798.1.S1_at1/112+18776532..18779875retrotransposon protein, putative, LINE subclass
LOC_Os02g31320OsAffx.8589.1.S1_at1/112+18783935..18786919transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g31330Os.39476.1.S1_at3/112+18788106..18789189transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g31830OsAffx.2820.1.S1_at11/112+18791230..18797143hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045836biological_processpositive regulation of meiosis
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12396.1.S1_at--285--2311Chr02:18771779..18771803 (25 bp)
AAAGGCGCAGCGAGAGCTTCCAGAT
LOC_Os02g31290
Os.12396.1.S1_at--1121--1791Chr02:18771830..18771854 (25 bp)
ACCCCATGTTGTATAGCAGTTTCCA
LOC_Os02g31290
Os.12396.1.S1_at--152--6031Chr02:18771931..18771955 (25 bp)
GAGAGGAAGTCTTTCCCTGCATTTT
LOC_Os02g31290
Os.12396.1.S1_at--393--8331Chr02:18771973..18771997 (25 bp)
GGCGTCTTCATCTATGTTCCATTTT
LOC_Os02g31290
Os.12396.1.S1_at--621--6131Chr02:18772003..18772027 (25 bp)
GAGGTCTCCTCTTTTAAGTTGTGTG
LOC_Os02g31290
Os.12396.1.S1_at--112--1311Chr02:18772029..18772053 (25 bp)
AGAGGAGTTCCGATTTTGTCTTCAG
LOC_Os02g31290
Os.12396.1.S1_at--1082--8691Chr02:18772045..18772069 (25 bp)
TGTCTTCAGGGAACTTTGACCGTAT
LOC_Os02g31290
Os.12396.1.S1_at--238--8931Chr02:18772061..18772085 (25 bp)
TGACCGTATCTATCGACCTTCATAT
LOC_Os02g31290
Os.12396.1.S1_at--536--4671NONE
GCGGGTGATATTGAACTCTCCTGTT
NONE
Os.12396.1.S1_at--401--2011NONE
ACTCTCCTGTTCAGTCTCTTGGAAA
NONE
Os.12396.1.S1_at--518--3751NONE
CTCTTGGAAACGCATCCCGTGGAAA
NONE
Target Sequence 
AAAGGCGCAGCGAGAGCTTCCAGATTTTGGTCACTTTTTAAGAATGTATTAACCCCATGTTGTATAGCAGTTTCCAGTAA
CTGTGCTGAGGGGAGAGAGAGAAAGAGAGGAGAGCAAGGAGACAATTTACATGAGTTTTTAGTGGTGGTGTGGAGAGGAA
GTCTTTCCCTGCATTTTCTTTTGGAACCTTTTCTGGCGTCTTCATCTATGTTCCATTTTGAGTTGAGGTCTCCTCTTTTA
AGTTGTGTGCAGAGGAGTTCCGATTTTGTCTTCAGGGAACTTTGACCGTATCTATCGACCTTCATATGTAAANNAANANN
NNNANANNNNNNGNNNGNNCNCNNNNNNNNGNNNGNNGNNCNNNGNNNNNNNNNAANNAANCGTCNGCGTGCCGTGCANC
ACTGCGTCCTCTGCTCGTTGTCATCANTGGTGTGCACCGCNCAACGAAGCGGGTGATATTGAACTCTCCTGTTCAGTCTC
TTGGAAACGCATCCCGTGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis