Browse Element(s) Details


OsAffx.5798.1.S1_at

Description tigr:9636.m01289
TID=OsAffx.5798.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 00335.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1308011/11retrotransposon protein, putative, unclassified
LOC_Os02g313101/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13030OsAffx.29173.1.S1_at11/118+7734031..7735475BTB/POZ domain containing protein
LOC_Os08g13030OsAffx.29173.2.S1_at2/118+7734031..7735475BTB/POZ domain containing protein
LOC_Os08g13040OsAffx.16969.1.S1_at11/118+7738035..7738394hypothetical protein
LOC_Os08g13050OsAffx.16970.1.S1_at11/118+7739762..7740521hypothetical protein
LOC_Os08g13060Os.53261.1.S1_at11/118+7750323..7751826BTB/POZ domain containing protein, expressed
LOC_Os08g13070Os.12333.1.S1_at11/118+7754349..7755879BTB/POZ domain containing protein, expressed
LOC_Os08g13080OsAffx.5798.1.S1_at11/118+7758239..7768513retrotransposon protein, putative, unclassified
LOC_Os08g13080OsAffx.20993.1.S1_at1/118+7758239..7768513retrotransposon protein, putative, unclassified
LOC_Os08g13090OsAffx.16971.1.S1_at11/118+7771507..7772546BTB/POZ domain containing protein
LOC_Os08g13100OsAffx.16972.1.S1_at11/118+7774631..7776083hypothetical protein
LOC_Os08g13110OsAffx.16973.1.S1_at10/118+7776999..7777499hypothetical protein
LOC_Os08g13120Os.40855.2.S1_x_at3/118+7783454..7784605hypothetical protein
LOC_Os08g13120Os.40855.4.S1_x_at2/118+7783454..7784605hypothetical protein
LOC_Os08g13120Os.40360.1.S1_x_at1/118+7783454..7784605hypothetical protein
LOC_Os08g13130OsAffx.29174.1.S1_at11/118+7791882..7796733hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5798.1.S1_at--956--3011Chr08:7759015..7759039 (25 bp)
AATGCTCTGGCACTGTCTTTACAAA
LOC_Os08g13080
OsAffx.5798.1.S1_at--1126--8431Chr08:7758755..7758992 (25 bp)
GGCCATGTTAGAGCTCACAGAGTTC
LOC_Os08g13080
OsAffx.5798.1.S1_at--651--10011Chr08:7758704..7758728 (25 bp)
TAGCTTGCTTACTCATATGGCTGCA
LOC_Os08g13080
OsAffx.5798.1.S1_at--762--10091Chr08:7758689..7758713 (25 bp)
TATGGCTGCATTCAGTCCAAAGGAT
LOC_Os08g13080
OsAffx.5798.1.S1_at--191--7911Chr08:7758668..7758692 (25 bp)
GGATTCCTTCGATTCCTTTAAGCAT
LOC_Os08g13080
OsAffx.5798.1.S1_at--603--1371Chr08:7758632..7758656 (25 bp)
AGAGCTAGCAAAGTCCTATCCGGAT
LOC_Os08g13080
OsAffx.5798.1.S1_at--754--931Chr08:7758518..7758542 (25 bp)
AGGCACTATTTCACAACTGGCTAAG
LOC_Os08g13080
OsAffx.5798.1.S1_at--943--10712Chr08:7758468..7758492 (25 bp)
TTGCTTTTCCTTTGGTCTATCGGAG
LOC_Os08g13080
OsAffx.5798.1.S1_at--361--5871Chr08:7758446..7758470 (25 bp)
GAGCCTCAAGCTAGTGTTAGTTCTT
LOC_Os08g13080
OsAffx.5798.1.S1_at--717--10431Chr08:7758430..7758454 (25 bp)
TTAGTTCTTCCTATTGCTACGGCAT
LOC_Os08g13080
OsAffx.5798.1.S1_at--337--5791Chr08:7758277..7758301 (25 bp)
GACGACGTGATAGCTCTCTTTCAAA
LOC_Os08g13080
Target Sequence 
AATGCTCTGGCACTGTCTTTACAAAGGAAAGACAAGGATATTTTGGAGGCCATGTTAGAGCTCACAGAGTTCAATGATCG
TTTCAATGAGATAAATTCTAGCTTGCTTACTCATATGGCTGCATTCAGTCCAAAGGATTCCTTCGATTCCTTTAAGCATG
ACCATCTAATAGAGCTAGCAAAGTCCTATCCGGATGATTTTGATGCAAGGCAATTGAAGGATCTTGATCATGAGCTTCAG
ATTTACATTGACAATGTTCGAGAAGATGAAAGATTTGGGAAATTAGGCACTATTTCACAACTGGCTAAGTTGATGGTCGA
TACAAAAAAACATCTTGCTTTTCCTTTGGTCTATCGGAGCCTCAAGCTAGTGTTAGTTCTTCCTATTGCTACGGCATCAG
TGGAGAGATGTTTTTCAGCAATGAAGATTGTGAAGACAGCACTACGGAATCGTATTAGTGATGAATTTATGAATGATGCT
ATCTTATGGTTCGTGGAGAAAGCTTTACTAGCTACAATTCCAAATGACGACGTGATAGCTCTCTTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis