Browse Element(s) Details


OsAffx.29173.2.S1_at

Description tigr:9636.m01275
TID=OsAffx.29173.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1296011/11MATH domain containing protein
LOC_Os08g130302/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12900OsAffx.20187.1.S1_at3/118+7662786..7667572retrotransposon protein, putative, unclassified
LOC_Os08g12900OsAffx.17344.1.S1_at2/118+7662786..7667572retrotransposon protein, putative, unclassified
LOC_Os08g12910NANA8+7669475..7672457retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12920NANA8+7673067..7679314transposon protein, putative, unclassified
LOC_Os08g12930OsAffx.5797.1.S1_at11/118+7680863..7681344hypothetical protein
LOC_Os08g12940NANA8+7683680..7685032transposon protein, putative, Pong sub-class
LOC_Os08g12950Os.25411.1.A1_at9/118+7685702..7686955transposon protein, putative, Pong sub-class
LOC_Os08g12960OsAffx.29173.2.S1_at11/118+7687480..7688523MATH domain containing protein
LOC_Os08g12960OsAffx.29173.1.S1_at5/118+7687480..7688523MATH domain containing protein
LOC_Os08g12970OsAffx.29168.1.S1_at11/118+7691945..7692957hypothetical protein
LOC_Os08g12980OsAffx.29169.3.S1_at11/118+7695123..7697084expressed protein
LOC_Os08g12980OsAffx.29169.1.S1_at1/118+7695123..7697084expressed protein
LOC_Os08g12990OsAffx.29170.1.S1_at11/118+7699627..7710283retrotransposon protein, putative, unclassified
LOC_Os08g13000OsAffx.29171.1.S1_at11/118+7711772..7712869BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29173.2.S1_at--532--4951Chr08:7688140..7688164 (25 bp)
GCATTACGCGACTTTCATGCACAGA
LOC_Os08g12960
OsAffx.29173.2.S1_at--886--10311Chr08:7688128..7688152 (25 bp)
TTTCATGCACAGAAGTCAACTGGAG
LOC_Os08g12960
OsAffx.29173.2.S1_at--279--5111Chr08:7688122..7688146 (25 bp)
GCACAGAAGTCAACTGGAGATGGAA
LOC_Os08g12960
OsAffx.29173.2.S1_at--132--5271Chr08:7688061..7688085 (25 bp)
GAATGCTTTGTTACCGTCGTCGTCC
LOC_Os08g12960
OsAffx.29173.2.S1_at--1063--8791Chr08:7688058..7688082 (25 bp)
TGCTTTGTTACCGTCGTCGTCCAGG
LOC_Os08g12960
OsAffx.29173.2.S1_at--965--3211Chr08:7687993..7688017 (25 bp)
CAAGGTGCCGCCGTCAGATATATTG
LOC_Os08g12960
OsAffx.29173.2.S1_at--320--7791Chr08:7687990..7688014 (25 bp)
GGTGCCGCCGTCAGATATATTGGAA
LOC_Os08g12960
OsAffx.29173.2.S1_at--837--1772Chr08:7734727..7734874 (25 bp)
ACCGTGGAAGACATGTATGCCATGG
LOC_Os08g13030
OsAffx.29173.2.S1_at--772--8512Chr08:7734731..7734878 (25 bp)
TGGAAGACATGTATGCCATGGACAG
LOC_Os08g13030
OsAffx.29173.2.S1_at--165--751Chr08:7687550..7687574 (25 bp)
ATGTTTGCATTGAGTTTATCGCCAC
LOC_Os08g12960
OsAffx.29173.2.S1_at--1012--9051Chr08:7687545..7687569 (25 bp)
TGCATTGAGTTTATCGCCACTCAAA
LOC_Os08g12960
Target Sequence 
GCATTACGCGACTTTCATGCACAGAAGTCAACTGGAGATGGAAGCGTCAGGCTACATCAAGGACGATCGCCTCACAATCG
AATGCTTTGTTACCGTCGTCGTCCAGGAATCGATGGCGTCTAATACCGTGAAGGCCCATGAATTAATCAAGGTGCCGCCG
TCAGATATATTGGAAAATTTTGGCGAATTGTTGGAGAAGGGGGAAGGGGCGGATGTGACTTTCGTTGTTGGGGGAGAGAA
AATCGCCGCGCACAAGATCGTCCTTGCAGCACGGTCATCCGTCTTCAAGGCGGAGCTCTATGGGCAGATGAAGGAGAAGA
GGGCCCGGCGGGTAACCGTGGAAGACATGTATGCCATGGACAGGATGAAGTTGCAGTGCGAAAGCATCCTCGGCGAGCAT
CTTGATGTGCAGACCGTCGCAACTACATTGGCTTTAGCTGATCAGCACAACTGCAACGGCCTTAAAGATGTTTGCATTGA
GTTTATCGCCACTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29173.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis