Browse Element(s) Details


OsAffx.5797.1.S1_at

Description tigr:9636.m01272
TID=OsAffx.5797.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1293011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12890Os.53272.1.S1_at11/118+7646288..7658069expressed protein
LOC_Os08g12890OsAffx.21285.1.S1_at1/118+7646288..7658069expressed protein
LOC_Os08g12890Os.48033.1.S1_at1/118+7646288..7658069expressed protein
LOC_Os08g12900OsAffx.20187.1.S1_at3/118+7662786..7667572retrotransposon protein, putative, unclassified
LOC_Os08g12900OsAffx.17344.1.S1_at2/118+7662786..7667572retrotransposon protein, putative, unclassified
LOC_Os08g12910NANA8+7669475..7672457retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12920NANA8+7673067..7679314transposon protein, putative, unclassified
LOC_Os08g12930OsAffx.5797.1.S1_at11/118+7680863..7681344hypothetical protein
LOC_Os08g12940NANA8+7683680..7685032transposon protein, putative, Pong sub-class
LOC_Os08g12950Os.25411.1.A1_at9/118+7685702..7686955transposon protein, putative, Pong sub-class
LOC_Os08g12960OsAffx.29173.2.S1_at11/118+7687480..7688523MATH domain containing protein
LOC_Os08g12960OsAffx.29173.1.S1_at5/118+7687480..7688523MATH domain containing protein
LOC_Os08g12970OsAffx.29168.1.S1_at11/118+7691945..7692957hypothetical protein
LOC_Os08g12980OsAffx.29169.3.S1_at11/118+7695123..7697084expressed protein
LOC_Os08g12980OsAffx.29169.1.S1_at1/118+7695123..7697084expressed protein
LOC_Os08g12990OsAffx.29170.1.S1_at11/118+7699627..7710283retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5797.1.S1_at--1074--9571Chr08:7680893..7680917 (25 bp)
TCTTGCCAGATTCGGTGGATCTTTC
LOC_Os08g12930
OsAffx.5797.1.S1_at--881--7911Chr08:7680909..7680933 (25 bp)
GGATCTTTCATTGTCCGGGTTACAT
LOC_Os08g12930
OsAffx.5797.1.S1_at--175--10731Chr08:7680919..7680943 (25 bp)
TTGTCCGGGTTACATCAAGGATGAT
LOC_Os08g12930
OsAffx.5797.1.S1_at--398--311Chr08:7680942..7680966 (25 bp)
ATACCATCACGGTTGAAAGCACGGT
LOC_Os08g12930
OsAffx.5797.1.S1_at--884--7811Chr08:7680970..7680994 (25 bp)
GGTCATCAAAGAATCGCGGCTGAGC
LOC_Os08g12930
OsAffx.5797.1.S1_at--615--5251Chr08:7680980..7681004 (25 bp)
GAATCGCGGCTGAGCGAAACCAAGG
LOC_Os08g12930
OsAffx.5797.1.S1_at--489--7631Chr08:7681004..7681028 (25 bp)
GGGACCTCTGAGATCATTCAAGTGC
LOC_Os08g12930
OsAffx.5797.1.S1_at--472--1271Chr08:7681014..7681038 (25 bp)
AGATCATTCAAGTGCCGCCGTCAGA
LOC_Os08g12930
OsAffx.5797.1.S1_at--989--2711Chr08:7681081..7681105 (25 bp)
AAGCAGGGAGCATATGTTACCTTCA
LOC_Os08g12930
OsAffx.5797.1.S1_at--736--4951Chr08:7681090..7681114 (25 bp)
GCATATGTTACCTTCATTGTTGGAA
LOC_Os08g12930
OsAffx.5797.1.S1_at--171--4891Chr08:7681121..7681145 (25 bp)
GCTTTGCGGCGCATAAGATCGTGCT
LOC_Os08g12930
Target Sequence 
TCTTGCCAGATTCGGTGGATCTTTCATTGTCCGGGTTACATCAAGGATGATACCATCACGGTTGAAAGCACGGTGAAGGT
CATCAAAGAATCGCGGCTGAGCGAAACCAAGGGGACCTCTGAGATCATTCAAGTGCCGCCGTCAGACATCGCGGAGCATC
TTGGCAAGTTGGCAAGCTGCTGGAGACAAAGCAGGGAGCATATGTTACCTTCATTGTTGGAAGGGGGAGCTTTGCGGCGC
ATAAGATCGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis