Browse Element(s) Details


OsAffx.17344.1.S1_at

Description tigr:9636.m03546
TID=OsAffx.17344.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3530011/11expressed protein
LOC_Os08g129002/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35270NANA8+22124247..22126788retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g35280OsAffx.29529.1.S1_x_at11/118+22135655..22136011hypothetical protein
LOC_Os08g35290NANA8+22137232..22139045retrotransposon, putative, centromere-specific
LOC_Os08g35300OsAffx.17344.1.S1_at11/118+22142686..22143387expressed protein
LOC_Os08g35310OsAffx.29530.1.S1_at11/118+22145014..22147113O-methyltransferase family protein
LOC_Os08g35320NANA8+22148257..22148864expressed protein
LOC_Os08g35330OsAffx.18924.2.S1_x_at6/118+22152758..22153687hypothetical protein
LOC_Os08g35330OsAffx.18924.3.S1_at1/118+22152758..22153687hypothetical protein
LOC_Os08g35340NANA8+22156124..22156531transposon protein, putative, unclassified
LOC_Os08g35350NANA8+22158953..22159543hypothetical protein
LOC_Os08g35360NANA8+22163374..22163978hypothetical protein
LOC_Os08g35370OsAffx.3348.1.S1_at1/118+22164209..22167473transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17344.1.S1_at--288--8151Chr08:22142842..22142866 (25 bp)
GGAAAAACTGCAATCCCTGCTACTC
LOC_Os08g35300
OsAffx.17344.1.S1_at--524--6271Chr08:22142873..22142897 (25 bp)
GATGTCGTAGACCTGATGGATCCAA
LOC_Os08g35300
OsAffx.17344.1.S1_at--38--5311Chr08:22142943..22142967 (25 bp)
GAAGGCAAACGTTGATGGCTCCTTT
LOC_Os08g35300
OsAffx.17344.1.S1_at--1130--10271Chr08:22143031..22143055 (25 bp)
TTTGCCTCCTGCAAGTCTATGTGCA
LOC_Os08g35300
OsAffx.17344.1.S1_at--140--1531Chr08:22143075..22143099 (25 bp)
AGCAGAACTTCTGGCTCTTAGAGAG
LOC_Os08g35300
OsAffx.17344.1.S1_at--439--10151Chr08:22143106..22143130 (25 bp)
TATCTGTTCCTCATTTGGACGCTCA
LOC_Os08g35300
OsAffx.17344.1.S1_at--584--8532Chr08:22143121..22143145 (25 bp)
TGGACGCTCAGACCAGTTATCCTGG
LOC_Os08g35300
OsAffx.17344.1.S1_at--965--5532Chr08:22143145..22143169 (25 bp)
GAAACAGATTGCTTAGTTGCCTTGC
LOC_Os08g35300
OsAffx.17344.1.S1_at--974--6671Chr08:22143160..22143184 (25 bp)
GTTGCCTTGCAGATGATACAGTCGA
LOC_Os08g35300
OsAffx.17344.1.S1_at--958--2771Chr08:22143189..22143213 (25 bp)
AAGAGCGACGTCTGAGCTGGCTTAT
LOC_Os08g35300
OsAffx.17344.1.S1_at--1062--951Chr08:22143326..22143350 (25 bp)
AGGACCTCTCTAGTCGTGTTTCTAT
LOC_Os08g35300
Target Sequence 
GGAAAAACTGCAATCCCTGCTACTCCAAGGAGATGTCGTAGACCTGATGGATCCAATCCAGCCTGTAAAATGAGATGGGA
GAGGCCGCCGGAAGGATGGATGAAGGCAAACGTTGATGGCTCCTTTGACAGCCAACTGCTTAAGGGTGGGATTGGTGTCG
TTATCAGGGACTGGGAGGGGGCGATTATCTTTGCCTCCTGCAAGTCTATGTGCAGATGCAGCTCCCCTCTTGAAGCAGAA
CTTCTGGCTCTTAGAGAGGGGATCTATCTGTTCCTCATTTGGACGCTCAGACCAGTTATCCTGGAAACAGATTGCTTAGT
TGCCTTGCAGATGATACAGTCGAAAGAAAGAGCGACGTCTGAGCTGGCTTATCTTGTTAGGGAGATCAGGGACCTCTTGA
ATGGAAGTAGAGAATTTGTTCTCTGGAAAATTCGGCGTGAGCAGAATATGGTCAGCCATTTTCTTGCTAATAAGCGTCGG
TGTGAGGACCTCTCTAGTCGTGTTTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17344.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis