Browse Element(s) Details


OsAffx.29529.1.S1_x_at

Description tigr:9636.m03544
TID=OsAffx.29529.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3528011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35250NANA8+22109088..22111646transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35260OsAffx.29528.1.S1_at11/118+22115446..22116936hypothetical protein
LOC_Os08g35270NANA8+22124247..22126788retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g35280OsAffx.29529.1.S1_x_at11/118+22135655..22136011hypothetical protein
LOC_Os08g35290NANA8+22137232..22139045retrotransposon, putative, centromere-specific
LOC_Os08g35300OsAffx.17344.1.S1_at11/118+22142686..22143387expressed protein
LOC_Os08g35310OsAffx.29530.1.S1_at11/118+22145014..22147113O-methyltransferase family protein
LOC_Os08g35320NANA8+22148257..22148864expressed protein
LOC_Os08g35330OsAffx.18924.2.S1_x_at6/118+22152758..22153687hypothetical protein
LOC_Os08g35330OsAffx.18924.3.S1_at1/118+22152758..22153687hypothetical protein
LOC_Os08g35340NANA8+22156124..22156531transposon protein, putative, unclassified
LOC_Os08g35350NANA8+22158953..22159543hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29529.1.S1_x_at--449--4151Chr08:22135932..22135956 (25 bp)
CGCGGGTGGTCAACCGCTGGTCCAT
LOC_Os08g35280
OsAffx.29529.1.S1_x_at--304--1792Chr08:22135904..22135928 (25 bp)
ACCGACGGCCCAGATTGGCCAGGAG
LOC_Os08g35280
OsAffx.29529.1.S1_x_at--1000--4151Chr08:22135896..22135920 (25 bp)
CCCAGATTGGCCAGGAGGCCGATCA
LOC_Os08g35280
OsAffx.29529.1.S1_x_at--631--6612Chr08:22135892..22135916 (25 bp)
GATTGGCCAGGAGGCCGATCAGACA
LOC_Os08g35280
OsAffx.29529.1.S1_x_at--941--8431Chr08:22135888..22135912 (25 bp)
GGCCAGGAGGCCGATCAGACAGTGC
LOC_Os08g35280
OsAffx.29529.1.S1_x_at--82--4051Chr08:22135877..22135901 (25 bp)
CGATCAGACAGTGCGGGGAACTACC
LOC_Os08g35280
OsAffx.29529.1.S1_x_at--836--8291Chr08:22135838..22135862 (25 bp)
GGCTTCAAAGCTGCCTGGCTGGCCA
LOC_Os08g35280
OsAffx.29529.1.S1_x_at--608--1591Chr08:22135830..22135854 (25 bp)
AGCTGCCTGGCTGGCCATGGCAAGC
LOC_Os08g35280
OsAffx.29529.1.S1_x_at--1105--3912Chr05:12232711..12232730 (20 bp)
CTGGCTGGCCATGGCAAGCGGCATC
NONE
OsAffx.29529.1.S1_x_at--1051--6191Chr08:22135760..22135784 (25 bp)
GAGGCTGCGACGGACAGCGCGAAAG
LOC_Os08g35280
OsAffx.29529.1.S1_x_at--248--2911Chr08:22135705..22135729 (25 bp)
AAGGAGAAGGAATCCTCACCGGCGA
LOC_Os08g35280
Target Sequence 
CGCGGGTGGTCAACCGCTGGTCCATGGGACCGACGGCCCAGATTGGCCAGGAGGCCGATCAGACAGTGCGGGGAACTACC
GCCGGGCTCGGCTCGGCTTCAAAGCTGCCTGGCTGGCCATGGCAAGCGGCATCGGCGCGCGCGGTCACCGGCGACGGCAA
CCGGCGGCGCGGGAGGCTGCGACGGACAGCGCGAAAGGCGGCGGCACACGGAAGAGAGGGAAAGAGGAAGGAGAAGGAAT
CCTCACCGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29529.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis