Browse Element(s) Details


OsAffx.29528.1.S1_at

Description tigr:9636.m03542
TID=OsAffx.29528.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3526011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35220Os.4787.1.S1_s_at10/118+22087228..22094558Protein kinase domain containing protein, expressed
LOC_Os08g35220OsAffx.6031.1.S1_at10/118+22087228..22094558Protein kinase domain containing protein, expressed
LOC_Os08g35230OsAffx.6032.1.S1_at11/118+22102117..22102608hypothetical protein
LOC_Os08g35240OsAffx.29527.1.S1_at11/118+22103677..22104408AP2 domain containing protein
LOC_Os08g35250NANA8+22109088..22111646transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35260OsAffx.29528.1.S1_at11/118+22115446..22116936hypothetical protein
LOC_Os08g35270NANA8+22124247..22126788retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g35280OsAffx.29529.1.S1_x_at11/118+22135655..22136011hypothetical protein
LOC_Os08g35290NANA8+22137232..22139045retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29528.1.S1_at--404--1091Chr08:22116881..22116905 (25 bp)
AGTGGCCCGAAGATGTATTCATTGC
LOC_Os08g35260
OsAffx.29528.1.S1_at--44--2811Chr08:22116872..22116896 (25 bp)
AAGATGTATTCATTGCTTGTCCACA
LOC_Os08g35260
OsAffx.29528.1.S1_at--1051--3591Chr08:22116862..22116886 (25 bp)
CATTGCTTGTCCACATTTTTACAGG
LOC_Os08g35260
OsAffx.29528.1.S1_at--347--7271Chr08:22116854..22116878 (25 bp)
GTCCACATTTTTACAGGACCCTCGA
LOC_Os08g35260
OsAffx.29528.1.S1_at--403--911Chr08:22115583..22115607 (25 bp)
AGGCGTGCGAGTGCATCGATGGCGC
LOC_Os08g35260
OsAffx.29528.1.S1_at--731--3831Chr08:22115550..22115574 (25 bp)
CTGCTGGTGGCTGCTTCGGGTTCAC
LOC_Os08g35260
OsAffx.29528.1.S1_at--998--10611Chr08:22115536..22115560 (25 bp)
TTCGGGTTCACGACTCCACATGATG
LOC_Os08g35260
OsAffx.29528.1.S1_at--1102--7671Chr08:22115533..22115557 (25 bp)
GGGTTCACGACTCCACATGATGCTT
LOC_Os08g35260
OsAffx.29528.1.S1_at--515--5711Chr08:22115525..22115549 (25 bp)
GACTCCACATGATGCTTGAGAAGGG
LOC_Os08g35260
OsAffx.29528.1.S1_at--547--1351Chr08:22115500..22115524 (25 bp)
AGAGATCTCGCAGTGGAGTACATGC
LOC_Os08g35260
OsAffx.29528.1.S1_at--530--4071Chr08:22115476..22115500 (25 bp)
CGAGGGTGTTAAGTTCGGCACGGTG
LOC_Os08g35260
Target Sequence 
AGTGGCCCGAAGATGTATTCATTGCTTGTCCACATTTTTACAGGACCCTCGACCCTAACACGAGCTCGGGGAGGCGTGCG
AGTGCATCGATGGCGCAGCCGCTGCTGCTGGTGGCTGCTTCGGGTTCACGACTCCACATGATGCTTGAGAAGGGAGAGAT
CTCGCAGTGGAGTACATGCGAGGGTGTTAAGTTCGGCACGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29528.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis