Browse Element(s) Details


Os.4787.1.S1_s_at

Description gb:AU181246
DB_XREF= gi:13805888
DB_XREF=AU181246
CLONE=C11065
TID=Os.4787.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.4787 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T50815 (A.thaliana) T50815 cdc2-like protein kinase - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3522010/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35200OsAffx.29526.1.S1_at11/118+22068811..22069472hypothetical protein
LOC_Os08g35210Os.15679.1.S1_s_at11/118+22077839..22086953Ferric reductase like transmembrane component family protein, expressed
LOC_Os08g35220Os.4787.1.S1_s_at10/118+22087228..22094558Protein kinase domain containing protein, expressed
LOC_Os08g35220OsAffx.6031.1.S1_at10/118+22087228..22094558Protein kinase domain containing protein, expressed
LOC_Os08g35230OsAffx.6032.1.S1_at11/118+22102117..22102608hypothetical protein
LOC_Os08g35240OsAffx.29527.1.S1_at11/118+22103677..22104408AP2 domain containing protein
LOC_Os08g35250NANA8+22109088..22111646transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35260OsAffx.29528.1.S1_at11/118+22115446..22116936hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0042023biological_processDNA endoreduplication
GO:0005634cellular_componentnucleus
GO:0009574cellular_componentpreprophase band
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4787.1.S1_s_at--1002--9831Chr08:22089247..22089271 (25 bp)
TACAAGACTATTCGTCCTACAACCC
LOC_Os08g35220
Os.4787.1.S1_s_at--617--9251NONE
TCCTACTGAGAGGATTTCCGCACAT
NONE
Os.4787.1.S1_s_at--182--1011Chr08:22087494..22087518 (25 bp)
AGGATTTCCGCACATGATGCTCTTT
LOC_Os08g35220
Os.4787.1.S1_s_at--362--9291Chr08:22087488..22087512 (25 bp)
TCCGCACATGATGCTCTTTGCGCAG
LOC_Os08g35220
Os.4787.1.S1_s_at--1155--10271Chr08:22087472..22087496 (25 bp)
TTTGCGCAGCATACTTCATCACTAA
LOC_Os08g35220
Os.4787.1.S1_s_at--250--10851Chr08:22087383..22087407 (25 bp)
TTGGCGTTAAATAGGTGTAAGTACT
LOC_Os08g35220
Os.4787.1.S1_s_at--280--3831Chr08:22087334..22087358 (25 bp)
CTGACCTTGGTTTAGGAACTATAGG
LOC_Os08g35220
Os.4787.1.S1_s_at--1122--10431Chr08:22087323..22087347 (25 bp)
TTAGGAACTATAGGGCTACTGCGTA
LOC_Os08g35220
Os.4787.1.S1_s_at--718--7571Chr08:22087311..22087335 (25 bp)
GGGCTACTGCGTAGTAAAAATGTTT
LOC_Os08g35220
Os.4787.1.S1_s_at--118--3111Chr08:22087273..22087297 (25 bp)
AATAGCTTCAATAGATATGTGGATA
LOC_Os08g35220
Os.4787.1.S1_s_at--443--7511Chr08:22087255..22087279 (25 bp)
GTGGATATGTTGTACATTATTACTT
LOC_Os08g35220
Target Sequence 
TACAAGACTATTCGTCCTACAACCCCAACGAAACGACGTTTGAGAGATATTTTTNNCANCTTTGACTNTCATGCAGTGGA
TTTAATTGATCGCATGTTGATNNTTAATCCTACTGAGAGGATTTCCGCACATGATGCTCTTTGCGCAGCATACTTCATCA
CTAAAATGTAGNGTCCTTTCTGTGGAAAAGAATNTAGACTCNCTGTTNTTTGCAAAGGATTAAGTTNCCTTGGCGTTAAA
TAGGTGTAAGTACTATNTGAAGACTGTTGTTTCTCCTTCTGACCTTGGTTTAGGAACTATAGGGCTACTGCGTAGTAAAA
ATGTTTTTTTTTNNGTCTTTAATAGCTTCAATAGATATGTGGATATGTTGTACATTATTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4787.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis