Browse Element(s) Details


OsAffx.29527.1.S1_at

Description tigr:9636.m03540
TID=OsAffx.29527.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain transcription factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3524011/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35210Os.15679.1.S1_s_at11/118+22077839..22086953Ferric reductase like transmembrane component family protein, expressed
LOC_Os08g35220Os.4787.1.S1_s_at10/118+22087228..22094558Protein kinase domain containing protein, expressed
LOC_Os08g35220OsAffx.6031.1.S1_at10/118+22087228..22094558Protein kinase domain containing protein, expressed
LOC_Os08g35230OsAffx.6032.1.S1_at11/118+22102117..22102608hypothetical protein
LOC_Os08g35240OsAffx.29527.1.S1_at11/118+22103677..22104408AP2 domain containing protein
LOC_Os08g35250NANA8+22109088..22111646transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35260OsAffx.29528.1.S1_at11/118+22115446..22116936hypothetical protein
LOC_Os08g35270NANA8+22124247..22126788retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29527.1.S1_at--41--8331Chr08:22103973..22103997 (25 bp)
GGCTCTCACGGTCGAGCAGATCCAG
LOC_Os08g35240
OsAffx.29527.1.S1_at--170--9911Chr08:22104070..22104094 (25 bp)
TACTCGATCTCGCAGCGGCAAGAAG
LOC_Os08g35240
OsAffx.29527.1.S1_at--1152--6291Chr08:22104187..22104211 (25 bp)
GATGATGTCATTGACTGGTCATTCA
LOC_Os08g35240
OsAffx.29527.1.S1_at--932--8591Chr08:22104202..22104226 (25 bp)
TGGTCATTCATGGACACGTTGCCGG
LOC_Os08g35240
OsAffx.29527.1.S1_at--406--7211Chr08:22104234..22104258 (25 bp)
GTCGTCAGCGGCTAGTACCAATGCT
LOC_Os08g35240
OsAffx.29527.1.S1_at--954--4691Chr08:22104241..22104265 (25 bp)
GCGGCTAGTACCAATGCTGATCTGG
LOC_Os08g35240
OsAffx.29527.1.S1_at--842--7791Chr08:22104264..22104288 (25 bp)
GGTCCCGGCCATGGATGATTTCATG
LOC_Os08g35240
OsAffx.29527.1.S1_at--337--6291Chr08:22104277..22104301 (25 bp)
GATGATTTCATGTACGGGTTCTTGC
LOC_Os08g35240
OsAffx.29527.1.S1_at--712--7671Chr08:22104292..22104316 (25 bp)
GGGTTCTTGCACACAATGCCGCCAT
LOC_Os08g35240
OsAffx.29527.1.S1_at--654--6171Chr08:22104337..22104361 (25 bp)
GAGGATGTGATGATCGACGGCAATT
LOC_Os08g35240
OsAffx.29527.1.S1_at--213--5751Chr08:22104352..22104376 (25 bp)
GACGGCAATTGCAACATGGATCAGA
LOC_Os08g35240
Target Sequence 
GGCTCTCACGGTCGAGCAGATCCAGGCCGAGGCGGCGAGGCACGCCAACCGCCCGTTTCCGGCGAACACCGCCGCCGCCG
GCGGGTCGTCGTCGTCGTACTCGATCTCGCAGCGGCAAGAAGCAGCAGCCCCTGCGCGGTCGACGAGCAACGACGACACG
GCCATGTCGTCAGTGCCCTCCACCGACGGCGGCGCTGCCGACTACGACGGCGGTGATGATGTCATTGACTGGTCATTCAT
GGACACGTTGCCGGCGATGTCGTCGTCAGCGGCTAGTACCAATGCTGATCTGGTCCCGGCCATGGATGATTTCATGTACG
GGTTCTTGCACACAATGCCGCCATCGCCATGCGAAGACGGTGGGGAGGATGTGATGATCGACGGCAATTGCAACATGGAT
CAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29527.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis