Browse Element(s) Details


Os.15679.1.S1_s_at

Description gb:CB636570
DB_XREF= gi:29631561
DB_XREF=OSJNEa02D11.r
CLONE=OSJNEa02D11
TID=Os.15679.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.15679 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T00265 (A.thaliana) T00265 cytochrome b245 beta chain homolog F - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3521011/11Ferric reductase like transmembrane component family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35190Os.11194.1.S1_at11/118+22057298..22058977Dormancy/auxin associated protein, expressed
LOC_Os08g35200OsAffx.29526.1.S1_at11/118+22068811..22069472hypothetical protein
LOC_Os08g35210Os.15679.1.S1_s_at11/118+22077839..22086953Ferric reductase like transmembrane component family protein, expressed
LOC_Os08g35220Os.4787.1.S1_s_at10/118+22087228..22094558Protein kinase domain containing protein, expressed
LOC_Os08g35220OsAffx.6031.1.S1_at10/118+22087228..22094558Protein kinase domain containing protein, expressed
LOC_Os08g35230OsAffx.6032.1.S1_at11/118+22102117..22102608hypothetical protein
LOC_Os08g35240OsAffx.29527.1.S1_at11/118+22103677..22104408AP2 domain containing protein
LOC_Os08g35250NANA8+22109088..22111646transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0006952biological_processdefense response
GO:0009060biological_processaerobic respiration
GO:0009408biological_processresponse to heat
GO:0009738biological_processabscisic acid mediated signaling
GO:0010053biological_processroot epidermal cell differentiation
GO:0043069biological_processnegative regulation of programmed cell death
GO:0005887cellular_componentintegral to plasma membrane
GO:0016174molecular_functionNAD(P)H oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15679.1.S1_s_at--436--1371Chr08:22086072..22086096 (25 bp)
AGAGCTGCACAACTATCTCACAAGT
LOC_Os08g35210
Os.15679.1.S1_s_at--976--9091Chr08:22086128..22086152 (25 bp)
TGCTCTCAATGGTGCAGGCCCTGAA
LOC_Os08g35210
Os.15679.1.S1_s_at--183--3491Chr08:22086142..22086166 (25 bp)
CAGGCCCTGAACCATGCAAAGCATG
LOC_Os08g35210
Os.15679.1.S1_s_at--737--6151Chr08:22086350..22086374 (25 bp)
GAGGTCTTCACTAGAATTGCTTCCA
LOC_Os08g35210
Os.15679.1.S1_s_at--358--8151Chr08:22086572..22086596 (25 bp)
GGAAAGCCCACACTAGCCAAAGAAT
LOC_Os08g35210
Os.15679.1.S1_s_at--1024--5531Chr08:22086601..22086625 (25 bp)
GAAACTATCACTTGACATGAGCCAC
LOC_Os08g35210
Os.15679.1.S1_s_at--931--2191Chr08:22086624..22086648 (25 bp)
ACAAAACGACAACTCGCTTCCATTT
LOC_Os08g35210
Os.15679.1.S1_s_at--753--1971Chr08:22086738..22086762 (25 bp)
ACTGACCCTCTTCACCATTTGTAAA
LOC_Os08g35210
Os.15679.1.S1_s_at--665--4291Chr08:22086839..22086863 (25 bp)
CCTCAGCCATCGTCTATCATAGATA
LOC_Os08g35210
Os.15679.1.S1_s_at--498--9991Chr08:22086872..22086896 (25 bp)
TAGCCTATAGCTACTCATCAGATGC
LOC_Os08g35210
Os.15679.1.S1_s_at--881--1291Chr08:22086891..22086915 (25 bp)
AGATGCTAAGCTTACAAGACCCTGA
LOC_Os08g35210
Target Sequence 
AGAGCTGCACAACTATCTCACAAGTGTGTATGAAGAGCGTGATGCCAGGTCGACGCTGCTCTCAATGGTGCAGGCCCTGA
ACCATGCAAAGCATGGTGTAGATATTGTGTCAGGCACAAGGGTCAGGACACATTTTGCAAGGCCTAACTGGAAGGAGGTC
TTCACTAGAATTGCTTCCAAGCACCCCAATTCTACAGTAGGGGTATTTTACTGTGGAAAGCCCACACTAGCCAAAGAATT
GAAGAAACTATCACTTGACATGAGCCACAAAACGACAACTCGCTTCCATTTCCACAAGGAGTACTTCTGATGGAATACAG
AACAGTCATGATTACAGTAGATATTGATAAAAAGAATCAAAATTTTTTGCATAGAAGCAAACTGACCCTCTTCACCATTT
GTAAATGTACATAGTATAATGCAGAGGGATAGATAGAAACATTTTTATTAACAAAATTTGAGAGGGCAAANTCTTCAGTG
CCCTCAGCCATCGTCTATCATAGATATACATGTATAGCCTATAGCTACTCATCAGATGCTAAGCTTACAAGACCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15679.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis