Browse Element(s) Details


Os.11194.1.S1_at

Description gb:AK067942.1
DB_XREF= gi:32977960
TID=Os.11194.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11194 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123A03, full insert sequence.
FL= gb:AK058233.1 gb:AK067942.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3519011/11Dormancy/auxin associated protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35170OsAffx.19542.3.S1_x_at6/118+22033214..22037958retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g35180NANA8+22042941..22043441hypothetical protein
LOC_Os08g35190Os.11194.1.S1_at11/118+22057298..22058977Dormancy/auxin associated protein, expressed
LOC_Os08g35200OsAffx.29526.1.S1_at11/118+22068811..22069472hypothetical protein
LOC_Os08g35210Os.15679.1.S1_s_at11/118+22077839..22086953Ferric reductase like transmembrane component family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007582biological_processphysiological process
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11194.1.S1_at--357--7491Chr08:22058417..22058441 (25 bp)
GTGGTCATCAGTTCGTTGGACCGAT
LOC_Os08g35190
Os.11194.1.S1_at--846--5471Chr08:22058442..22058466 (25 bp)
GAACTATAGCGCGATCCAGCGTGGT
LOC_Os08g35190
Os.11194.1.S1_at--130--2711Chr08:22058534..22058558 (25 bp)
AAGCTAGCTAGCTGACGTGCCTGAG
LOC_Os08g35190
Os.11194.1.S1_at--186--4991Chr08:22058566..22058590 (25 bp)
GCATCCGTTGTGTCTCATGAATCTG
LOC_Os08g35190
Os.11194.1.S1_at--872--5251Chr08:22058584..22058608 (25 bp)
GAATCTGTGTCTGTGTCTTGAATCC
LOC_Os08g35190
Os.11194.1.S1_at--263--3631Chr08:22058600..22058624 (25 bp)
CTTGAATCCGTGTGTCTGTGTGTGA
LOC_Os08g35190
Os.11194.1.S1_at--516--10671Chr08:22058659..22058683 (25 bp)
TTCCTATGTAACTATGCGCCTACGC
LOC_Os08g35190
Os.11194.1.S1_at--929--4451Chr08:22058676..22058765 (25 bp)
GCCTACGCCGATAGATCATCTGAAA
LOC_Os08g35190
Os.11194.1.S1_at--1124--2991Chr08:22058780..22058804 (25 bp)
AATGAGAGTGTTCGCTCTGTATCCT
LOC_Os08g35190
Os.11194.1.S1_at--1044--6891Chr08:22058798..22058822 (25 bp)
GTATCCTCCTCTGTAATTAAGCACT
LOC_Os08g35190
Os.11194.1.S1_at--392--2971Chr08:22058840..22058864 (25 bp)
AATGGAAAGCCATGCCTTTGCTGCT
LOC_Os08g35190
Target Sequence 
GTGGTCATCAGTTCGTTGGACCGATGAACTATAGCGCGATCCAGCGTGGTGAAAAAGTTCTGAAAAATCTGAAAAAACAA
AATAACCAATCGAGCAGAGGAATATCTATGACAAAGGAAGCTAGCTAGCTGACGTGCCTGAGGCTTCACGCATCCGTTGT
GTCTCATGAATCTGTGTCTGTGTCTTGAATCCGTGTGTCTGTGTGTGAGGTGGTCGCTGGCGATGCGTGCAGTGTTTTTT
TTTTCCTATGTAACTATGCGCCTACGCCGATAGATCATCTGAAATATCAAATACTAGTAGTGATAGTGTTAGTGGAGTCA
TAGGCGATCTAGCTAGAGAGATGTCTGAAATGGTATGAGGATGTAATGAGAGTGTTCGCTCTGTATCCTCCTCTGTAATT
AAGCACTATGGAAGTAAGAAAAAAAATGGAAAGCCATGCCTTTGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11194.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis