Browse Element(s) Details


OsAffx.29526.1.S1_at

Description tigr:9636.m03535
TID=OsAffx.29526.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3520011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35190Os.11194.1.S1_at11/118+22057298..22058977Dormancy/auxin associated protein, expressed
LOC_Os08g35200OsAffx.29526.1.S1_at11/118+22068811..22069472hypothetical protein
LOC_Os08g35210Os.15679.1.S1_s_at11/118+22077839..22086953Ferric reductase like transmembrane component family protein, expressed
LOC_Os08g35220Os.4787.1.S1_s_at10/118+22087228..22094558Protein kinase domain containing protein, expressed
LOC_Os08g35220OsAffx.6031.1.S1_at10/118+22087228..22094558Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29526.1.S1_at--223--3231Chr08:22068843..22068867 (25 bp)
CAAGATAGACGCCTCTATAAAGAGT
LOC_Os08g35200
OsAffx.29526.1.S1_at--237--6491Chr08:22068846..22068870 (25 bp)
GATAGACGCCTCTATAAAGAGTTGG
LOC_Os08g35200
OsAffx.29526.1.S1_at--443--5811Chr08:22068850..22068874 (25 bp)
GACGCCTCTATAAAGAGTTGGATAT
LOC_Os08g35200
OsAffx.29526.1.S1_at--351--7951Chr08:22068869..22068893 (25 bp)
GGATATCAACAATAACATCATCGGG
LOC_Os08g35200
OsAffx.29526.1.S1_at--786--2451Chr08:22068876..22068900 (25 bp)
AACAATAACATCATCGGGACGGCCA
LOC_Os08g35200
OsAffx.29526.1.S1_at--814--2231Chr08:22068877..22068901 (25 bp)
ACAATAACATCATCGGGACGGCCAC
LOC_Os08g35200
OsAffx.29526.1.S1_at--1000--9811Chr08:22068881..22068905 (25 bp)
TAACATCATCGGGACGGCCACAAGA
LOC_Os08g35200
OsAffx.29526.1.S1_at--388--2091Chr08:22068883..22068907 (25 bp)
ACATCATCGGGACGGCCACAAGAAG
LOC_Os08g35200
OsAffx.29526.1.S1_at--907--491Chr08:22068888..22068912 (25 bp)
ATCGGGACGGCCACAAGAAGCAGGT
LOC_Os08g35200
OsAffx.29526.1.S1_at--1091--5731Chr08:22068893..22068972 (25 bp)
GACGGCCACAAGAAGCAGGTGACTT
LOC_Os08g35200
OsAffx.29526.1.S1_at--469--8451Chr08:22068896..22069408 (25 bp)
GGCCACAAGAAGCAGGTGACTTGAT
LOC_Os08g35200
Target Sequence 
CAAGATAGACGCCTCTATAAAGAGTTGGATATCAACAATAACATCATCGGGACGGCCACAAGAAGCAGGTGACTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29526.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis