Browse Element(s) Details


OsAffx.6032.1.S1_at

Description tigr:9636.m03539
TID=OsAffx.6032.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3523011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35210Os.15679.1.S1_s_at11/118+22077839..22086953Ferric reductase like transmembrane component family protein, expressed
LOC_Os08g35220Os.4787.1.S1_s_at10/118+22087228..22094558Protein kinase domain containing protein, expressed
LOC_Os08g35220OsAffx.6031.1.S1_at10/118+22087228..22094558Protein kinase domain containing protein, expressed
LOC_Os08g35230OsAffx.6032.1.S1_at11/118+22102117..22102608hypothetical protein
LOC_Os08g35240OsAffx.29527.1.S1_at11/118+22103677..22104408AP2 domain containing protein
LOC_Os08g35250NANA8+22109088..22111646transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35260OsAffx.29528.1.S1_at11/118+22115446..22116936hypothetical protein
LOC_Os08g35270NANA8+22124247..22126788retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6032.1.S1_at--43--5231Chr08:22102160..22102184 (25 bp)
GAATTTATTTCGTCTTTAGCTTCAA
LOC_Os08g35230
OsAffx.6032.1.S1_at--172--2271Chr08:22102387..22102411 (25 bp)
AAATCTCCGAAATCAGCGGCTAATT
LOC_Os08g35230
OsAffx.6032.1.S1_at--953--4691Chr08:22102402..22102426 (25 bp)
GCGGCTAATTGTTATGCTGATCGAA
LOC_Os08g35230
OsAffx.6032.1.S1_at--890--6371Chr08:22102420..22102444 (25 bp)
GATCGAATTTCGTGCACATCACCAC
LOC_Os08g35230
OsAffx.6032.1.S1_at--31--1691Chr08:22102443..22102467 (25 bp)
ACCAACAACCAACATCGAACCGAAG
LOC_Os08g35230
OsAffx.6032.1.S1_at--1046--5371Chr08:22102464..22102488 (25 bp)
GAAGCAAAAGATAACCACCGCCACA
LOC_Os08g35230
OsAffx.6032.1.S1_at--749--2211Chr08:22102486..22102510 (25 bp)
ACAACCATTGGAGCTGACCCGACAA
LOC_Os08g35230
OsAffx.6032.1.S1_at--506--5891Chr08:22102496..22102520 (25 bp)
GAGCTGACCCGACAAGGATATTGAC
LOC_Os08g35230
OsAffx.6032.1.S1_at--670--5311Chr08:22102530..22102554 (25 bp)
GAAGGTTGCCACTAGACAGATGACA
LOC_Os08g35230
OsAffx.6032.1.S1_at--374--10031Chr08:22102542..22102566 (25 bp)
TAGACAGATGACACTCCCATCGTCT
LOC_Os08g35230
OsAffx.6032.1.S1_at--946--1991Chr08:22102554..22102578 (25 bp)
ACTCCCATCGTCTCAATCACTGGAT
LOC_Os08g35230
Target Sequence 
GAATTTATTTCGTCTTTAGCTTCAAAAAAGGAACAAAATCTCCGAAATCAGCGGCTAATTGTTATGCTGATCGAATTTCG
TGCACATCACCACCAACAACCAACATCGAACCGAAGCAAAAGATAACCACCGCCACAACCATTGGAGCTGACCCGACAAG
GATATTGACAATGGTTATGAAGGTTGCCACTAGACAGATGACACTCCCATCGTCTCAATCACTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6032.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis