Browse Element(s) Details


OsAffx.29530.1.S1_at

Description tigr:9636.m03547
TID=OsAffx.29530.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=methyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3531011/11O-methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35270NANA8+22124247..22126788retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g35280OsAffx.29529.1.S1_x_at11/118+22135655..22136011hypothetical protein
LOC_Os08g35290NANA8+22137232..22139045retrotransposon, putative, centromere-specific
LOC_Os08g35300OsAffx.17344.1.S1_at11/118+22142686..22143387expressed protein
LOC_Os08g35310OsAffx.29530.1.S1_at11/118+22145014..22147113O-methyltransferase family protein
LOC_Os08g35320NANA8+22148257..22148864expressed protein
LOC_Os08g35330OsAffx.18924.2.S1_x_at6/118+22152758..22153687hypothetical protein
LOC_Os08g35330OsAffx.18924.3.S1_at1/118+22152758..22153687hypothetical protein
LOC_Os08g35340NANA8+22156124..22156531transposon protein, putative, unclassified
LOC_Os08g35350NANA8+22158953..22159543hypothetical protein
LOC_Os08g35360NANA8+22163374..22163978hypothetical protein
LOC_Os08g35370OsAffx.3348.1.S1_at1/118+22164209..22167473transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0008171molecular_functionO-methyltransferase activity
GO:0047763molecular_functioncaffeate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29530.1.S1_at--1086--9171Chr08:22146569..22146593 (25 bp)
TGCCGAGTATAGCATGCTGTTCAAC
LOC_Os08g35310
OsAffx.29530.1.S1_at--1071--2311Chr08:22146544..22146568 (25 bp)
AAAGGGATGGCGTCCGACAGCCACT
LOC_Os08g35310
OsAffx.29530.1.S1_at--1069--1691Chr08:22146526..22146550 (25 bp)
AGCCACTTCGTGGTGAACATAGTCA
LOC_Os08g35310
OsAffx.29530.1.S1_at--114--3171Chr08:22146422..22146446 (25 bp)
AATTGCTGATGCCTTTCCACACATA
LOC_Os08g35310
OsAffx.29530.1.S1_at--693--2311Chr08:22146398..22146422 (25 bp)
AAAGTGCTATGTTTTGGACCTCCCT
LOC_Os08g35310
OsAffx.29530.1.S1_at--305--851Chr08:22146363..22146387 (25 bp)
ATGGCACCCCAACTGATGGTATTGT
LOC_Os08g35310
OsAffx.29530.1.S1_at--416--5671Chr08:22146322..22146346 (25 bp)
GACATGATGCACTTTGTTCCGTCAG
LOC_Os08g35310
OsAffx.29530.1.S1_at--158--4251Chr08:22146304..22146328 (25 bp)
CCGTCAGCAGATGTTGTGTTACTCA
LOC_Os08g35310
OsAffx.29530.1.S1_at--974--7951Chr08:22145172..22145196 (25 bp)
GGATCACCATCTCAACAGATACTTG
LOC_Os08g35310
OsAffx.29530.1.S1_at--15--1251Chr08:22145072..22145096 (25 bp)
AGATATTCTTGGAGGCGGGCTTTAC
LOC_Os08g35310
OsAffx.29530.1.S1_at--198--8371Chr08:22145059..22145083 (25 bp)
GGCGGGCTTTACACGATACAAGATT
LOC_Os08g35310
Target Sequence 
TGCCGAGTATAGCATGCTGTTCAACAAAGGGATGGCGTCCGACAGCCACTTCGTGGTGAACATAGTCATCCATGAGTGCG
CCGAGGTGTTTGTGGGGGTAAGGTCGCTAGTTGATGTCGGTGGTAGGAATGGCGCGATGGCGAAGGCAATTGCTGATGCC
TTTCCACACATAAAGTGCTATGTTTTGGACCTCCCTCATGTTATCCATGGCACCCCAACTGATGGTATTGTTGAGTTTGT
TGCAGGGGACATGATGCACTTTGTTCCGTCAGCAGATGTTGTGTTACTCAAGTTTGTACTACATGATTGGAGCGATGAGG
ATTGCGTAAGAATCTTGACACGATGCAAACAAGCTATAACTAACAAGGAAGAAGGAGGCAAAGTGATAATTATAGATACA
GTGATTGGATCACCATCTCAACAGATACTTGAAGCTCAACTTTCAATGGATATATGCATGATGACGTTGACAACAGGCAA
AGAACGAGAAGAGAGAGATTGGCATAAGATATTCTTGGAGGCGGGCTTTACACGATACAAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis