Browse Element(s) Details


OsAffx.16973.1.S1_at

Description tigr:9636.m01293
TID=OsAffx.16973.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1311010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13070Os.12333.1.S1_at11/118+7754349..7755879BTB/POZ domain containing protein, expressed
LOC_Os08g13080OsAffx.5798.1.S1_at11/118+7758239..7768513retrotransposon protein, putative, unclassified
LOC_Os08g13080OsAffx.20993.1.S1_at1/118+7758239..7768513retrotransposon protein, putative, unclassified
LOC_Os08g13090OsAffx.16971.1.S1_at11/118+7771507..7772546BTB/POZ domain containing protein
LOC_Os08g13100OsAffx.16972.1.S1_at11/118+7774631..7776083hypothetical protein
LOC_Os08g13110OsAffx.16973.1.S1_at10/118+7776999..7777499hypothetical protein
LOC_Os08g13120Os.40855.2.S1_x_at3/118+7783454..7784605hypothetical protein
LOC_Os08g13120Os.40855.4.S1_x_at2/118+7783454..7784605hypothetical protein
LOC_Os08g13120Os.40360.1.S1_x_at1/118+7783454..7784605hypothetical protein
LOC_Os08g13130OsAffx.29174.1.S1_at11/118+7791882..7796733hypothetical protein
LOC_Os08g13140Os.26886.2.S1_s_at7/118+7802214..7802666hypothetical protein
LOC_Os08g13140Os.26886.6.S1_s_at4/118+7802214..7802666hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16973.1.S1_at--349--5751Chr08:7777387..7777411 (25 bp)
GACGGCAACCGCTGCTGGACCAGCT
LOC_Os08g13110
OsAffx.16973.1.S1_at--604--9311NONE
TCCCGAGACGCCTGGAGCATGAGAT
NONE
OsAffx.16973.1.S1_at--413--5811Chr08:7777234..7777381 (25 bp)
GACGCCTGGAGCATGAGATCAGCAG
LOC_Os08g13110
OsAffx.16973.1.S1_at--254--6451Chr08:7777218..7777242 (25 bp)
GATCAGCAGGATTGATGGTCGTATC
LOC_Os08g13110
OsAffx.16973.1.S1_at--176--10771Chr08:7777207..7777231 (25 bp)
TTGATGGTCGTATCAGGGAGCTAGA
LOC_Os08g13110
OsAffx.16973.1.S1_at--414--7991Chr08:7777182..7777206 (25 bp)
GGATGAATGCTACAGGCTTGTCTCT
LOC_Os08g13110
OsAffx.16973.1.S1_at--399--631Chr08:7777176..7777200 (25 bp)
ATGCTACAGGCTTGTCTCTGAAGGA
LOC_Os08g13110
OsAffx.16973.1.S1_at--884--9491Chr08:7777162..7777186 (25 bp)
TCTCTGAAGGACATGGGTCGACGCT
LOC_Os08g13110
OsAffx.16973.1.S1_at--1098--9351Chr08:7777145..7777169 (25 bp)
TCGACGCTGGTGATAAGGTTTAGGA
LOC_Os08g13110
OsAffx.16973.1.S1_at--324--3671Chr08:7777105..7777129 (25 bp)
CTTTGAGGGCAAAGCTGATATCCCG
LOC_Os08g13110
OsAffx.16973.1.S1_at--368--1071Chr08:7777100..7777124 (25 bp)
AGGGCAAAGCTGATATCCCGTTACC
LOC_Os08g13110
Target Sequence 
GACGGCAACCGCTGCTGGACCAGCTCCCGAGACGCCTGGAGCATGAGATCAGCAGGATTGATGGTCGTATCAGGGAGCTA
GAGGATGAATGCTACAGGCTTGTCTCTGAAGGACATGGGTCGACGCTGGTGATAAGGTTTAGGATTGAAAAGATGGAAGC
TTTGAGGGCAAAGCTGATATCCCGTTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16973.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis