Browse Element(s) Details


Os.12333.1.S1_at

Description gb:AK060189.1
DB_XREF= gi:32970207
TID=Os.12333.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12333 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023031F24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-E01, full insert sequence.
FL= gb:AK060189.1 gb:AK069781.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1307011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13020OsAffx.16968.1.S1_at11/118+7729150..7730754Speckle-type POZ protein, putative
LOC_Os08g13020Os.72.1.S1_x_at1/118+7729150..7730754Speckle-type POZ protein, putative
LOC_Os08g13030OsAffx.29173.1.S1_at11/118+7734031..7735475BTB/POZ domain containing protein
LOC_Os08g13030OsAffx.29173.2.S1_at2/118+7734031..7735475BTB/POZ domain containing protein
LOC_Os08g13040OsAffx.16969.1.S1_at11/118+7738035..7738394hypothetical protein
LOC_Os08g13050OsAffx.16970.1.S1_at11/118+7739762..7740521hypothetical protein
LOC_Os08g13060Os.53261.1.S1_at11/118+7750323..7751826BTB/POZ domain containing protein, expressed
LOC_Os08g13070Os.12333.1.S1_at11/118+7754349..7755879BTB/POZ domain containing protein, expressed
LOC_Os08g13080OsAffx.5798.1.S1_at11/118+7758239..7768513retrotransposon protein, putative, unclassified
LOC_Os08g13080OsAffx.20993.1.S1_at1/118+7758239..7768513retrotransposon protein, putative, unclassified
LOC_Os08g13090OsAffx.16971.1.S1_at11/118+7771507..7772546BTB/POZ domain containing protein
LOC_Os08g13100OsAffx.16972.1.S1_at11/118+7774631..7776083hypothetical protein
LOC_Os08g13110OsAffx.16973.1.S1_at10/118+7776999..7777499hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12333.1.S1_at--389--5891Chr08:7754915..7754939 (25 bp)
GAGCGGGACAGAGCCTATCAGCATT
LOC_Os08g13070
Os.12333.1.S1_at--516--6611Chr08:7754839..7754863 (25 bp)
GATTGGTTGCCGTCAATTCGTGATC
LOC_Os08g13070
Os.12333.1.S1_at--335--2491Chr08:7754800..7754824 (25 bp)
AACAGCGAGATGATCCGGCACTTGC
LOC_Os08g13070
Os.12333.1.S1_at--553--5411Chr08:7754741..7754765 (25 bp)
GAAGCTGTTGTGTCAAAGCATCCTT
LOC_Os08g13070
Os.12333.1.S1_at--468--7831Chr08:7754698..7754722 (25 bp)
GGTAACGTTGCAACTACACTGGCTC
LOC_Os08g13070
Os.12333.1.S1_at--542--1951Chr08:7754681..7754705 (25 bp)
ACTGGCTCTGGCTGATCAACATCAT
LOC_Os08g13070
Os.12333.1.S1_at--158--6431Chr08:7754572..7754596 (25 bp)
GATCTTGAAAACACAGCTCCTTCTC
LOC_Os08g13070
Os.12333.1.S1_at--251--3651Chr08:7754553..7754577 (25 bp)
CTTCTCTCGTCGCTTAGGCAAAGGA
LOC_Os08g13070
Os.12333.1.S1_at--573--8571Chr08:7754434..7754458 (25 bp)
TGGATATCTGTCTACTTTTACTGGA
LOC_Os08g13070
Os.12333.1.S1_at--242--7271Chr08:7754405..7754429 (25 bp)
GTCCTTGTGGTTACTTTACTCTCTA
LOC_Os08g13070
Os.12333.1.S1_at--151--2411Chr08:7754362..7754386 (25 bp)
AAACACTGGTATTGCTTGCACCTAT
LOC_Os08g13070
Target Sequence 
GAGCGGGACAGAGCCTATCAGCATTGTGGATATGCAACCGGTTGTGTTCAAGGCCCTGCTCCAGTTCATCTATACTGATT
GGTTGCCGTCAATTCGTGATCTTGNNGGAGACGATAACAGCGAGATGATCCGGCACTTGCTTGTCGCCGCGGACAGATAT
GCTGTGGACAGGCTGAAGCTGTTGTGTCAAAGCATCCTTTGCAAGAATCTTCGTGTTGGTAACGTTGCAACTACACTGGC
TCTGGCTGATCAACATCATTGTGGCATGCTTAAGGATGCTTGCATTGAATTTATGTCATGTCCAAACATGTTGGATGATG
TAGTGGCATCCCAAGGGTTTGTGGATCTTGAAAACACAGCTCCTTCTCTCGTCGCTTAGGCAAAGGAAAAAATGGGCAGG
TTCAAGAAAATGTCGAGGATGACAAAGAGCAATGCACCGGAAGATGAACCTAACAGTAATTCGTTTAGTTTATAAGTAAT
ATGGATATCTGTCTACTTTTACTGGATCAGGTCCTTGTGGTTACTTTACTCTCTATATAAATAGAAATAACTTAAACACT
GGTATTGCTTGCACCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12333.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis