Browse Element(s) Details


OsAffx.16968.1.S1_at

Description tigr:9636.m01283
TID=OsAffx.16968.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1302011/11Speckle-type POZ protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12990OsAffx.29170.1.S1_at11/118+7699627..7710283retrotransposon protein, putative, unclassified
LOC_Os08g13000OsAffx.29171.1.S1_at11/118+7711772..7712869BTB/POZ domain containing protein
LOC_Os08g13010OsAffx.29172.1.S1_at10/118+7717968..7720038hypothetical protein
LOC_Os08g13010Os.8747.3.S1_x_at2/118+7717968..7720038hypothetical protein
LOC_Os08g13020OsAffx.16968.1.S1_at11/118+7729150..7730754Speckle-type POZ protein, putative
LOC_Os08g13020Os.72.1.S1_x_at1/118+7729150..7730754Speckle-type POZ protein, putative
LOC_Os08g13030OsAffx.29173.1.S1_at11/118+7734031..7735475BTB/POZ domain containing protein
LOC_Os08g13030OsAffx.29173.2.S1_at2/118+7734031..7735475BTB/POZ domain containing protein
LOC_Os08g13040OsAffx.16969.1.S1_at11/118+7738035..7738394hypothetical protein
LOC_Os08g13050OsAffx.16970.1.S1_at11/118+7739762..7740521hypothetical protein
LOC_Os08g13060Os.53261.1.S1_at11/118+7750323..7751826BTB/POZ domain containing protein, expressed
LOC_Os08g13070Os.12333.1.S1_at11/118+7754349..7755879BTB/POZ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16968.1.S1_at--1100--4531Chr08:7729799..7729823 (25 bp)
GCCCGTAGCGTGACCGTGGATGACA
LOC_Os08g13020
OsAffx.16968.1.S1_at--684--671Chr08:7729818..7729842 (25 bp)
ATGACACGCAGCCTGACGTTTTCAG
LOC_Os08g13020
OsAffx.16968.1.S1_at--965--1071Chr08:7729841..7729865 (25 bp)
AGGGCTCTCCCACATTTCATGTACA
LOC_Os08g13020
OsAffx.16968.1.S1_at--470--2291Chr08:7729914..7729938 (25 bp)
AAATGATCAGGCTTCTACTCGTGGC
LOC_Os08g13020
OsAffx.16968.1.S1_at--1041--1231Chr08:7729968..7729992 (25 bp)
AGTTGCTGTGCGAAAGCGTCCTCGA
LOC_Os08g13020
OsAffx.16968.1.S1_at--600--1631Chr08:7729982..7730006 (25 bp)
AGCGTCCTCGATGATTTACTTGATG
LOC_Os08g13020
OsAffx.16968.1.S1_at--959--5631Chr08:7730011..7730035 (25 bp)
GACAGTTGGAACTACGCTAGCTTTA
LOC_Os08g13020
OsAffx.16968.1.S1_at--342--4951Chr08:7730044..7730068 (25 bp)
GCATAGCTGCAACAACCTTAAGGAT
LOC_Os08g13020
OsAffx.16968.1.S1_at--221--5611Chr08:7730145..7730169 (25 bp)
GAAATTGTCCTTATGTCTTGATAGA
LOC_Os08g13020
OsAffx.16968.1.S1_at--536--331Chr08:7730671..7730695 (25 bp)
ATACATACTACATTGGCCTTGCTTG
LOC_Os08g13020
OsAffx.16968.1.S1_at--56--31Chr08:7730682..7730706 (25 bp)
ATTGGCCTTGCTTGTTGTAACGAAT
LOC_Os08g13020
Target Sequence 
GCCCGTAGCGTGACCGTGGATGACACGCAGCCTGACGTTTTCAGGGCTCTCCCACATTTCATGTACACCGACTCGTTGCC
CGACATGGACGGCGTTGAAGATGCCGACTATGTTGAAATGATCAGGCTTCTACTCGTGGCCGCGGATAGATATGCCATGG
ATAGGATGAAGTTGCTGTGCGAAAGCGTCCTCGATGATTTACTTGATGCGGAGACAGTTGGAACTACGCTAGCTTTAGCT
GATCAGCATAGCTGCAACAACCTTAAGGATGTTTGCGTTAAATTTATGGCTACTTCAAAAGGGATGGATGCTGTAATGGC
AACTGAAGGCTATGATAATCTCAAGAGAAATTGTCCTTATGTCTTGATAGATGTGTTGGAGAAGCTAAACAGGGGCAAGG
CAATACATACTACATTGGCCTTGCTTGTTGTAACGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16968.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis