Browse Element(s) Details


OsAffx.29172.1.S1_at

Description tigr:9636.m01281
TID=OsAffx.29172.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1301010/11hypothetical protein
LOC_Os08g079401/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12980OsAffx.29169.3.S1_at11/118+7695123..7697084expressed protein
LOC_Os08g12980OsAffx.29169.1.S1_at1/118+7695123..7697084expressed protein
LOC_Os08g12990OsAffx.29170.1.S1_at11/118+7699627..7710283retrotransposon protein, putative, unclassified
LOC_Os08g13000OsAffx.29171.1.S1_at11/118+7711772..7712869BTB/POZ domain containing protein
LOC_Os08g13010OsAffx.29172.1.S1_at10/118+7717968..7720038hypothetical protein
LOC_Os08g13010Os.8747.3.S1_x_at2/118+7717968..7720038hypothetical protein
LOC_Os08g13020OsAffx.16968.1.S1_at11/118+7729150..7730754Speckle-type POZ protein, putative
LOC_Os08g13020Os.72.1.S1_x_at1/118+7729150..7730754Speckle-type POZ protein, putative
LOC_Os08g13030OsAffx.29173.1.S1_at11/118+7734031..7735475BTB/POZ domain containing protein
LOC_Os08g13030OsAffx.29173.2.S1_at2/118+7734031..7735475BTB/POZ domain containing protein
LOC_Os08g13040OsAffx.16969.1.S1_at11/118+7738035..7738394hypothetical protein
LOC_Os08g13050OsAffx.16970.1.S1_at11/118+7739762..7740521hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29172.1.S1_at--214--5431Chr08:7719839..7719863 (25 bp)
GAACCTTGGTACATTTGAAGCCTTC
LOC_Os08g13010
OsAffx.29172.1.S1_at--869--6571Chr08:7719742..7719951 (25 bp)
GATTCTGACATGTCCTTGACTGATG
LOC_Os08g13010
OsAffx.29172.1.S1_at--964--6292Chr08:4469985..4470005 (21 bp)
GATGATGATGGTTAACTCCGACGAG
LOC_Os08g07940
OsAffx.29172.1.S1_at--801--1991Chr08:7719615..7719639 (25 bp)
ACTCCGACGAGTTGTTGATGACGAA
LOC_Os08g13010
OsAffx.29172.1.S1_at--503--1371NONE
AGACCAGCTCCGACGTGAAGCTGAT
NONE
OsAffx.29172.1.S1_at--804--2331Chr08:7718882..7718906 (25 bp)
AAAGAGGACGTCTTGCTGCTGTCAC
LOC_Os08g13010
OsAffx.29172.1.S1_at--328--9131Chr08:7718866..7718890 (25 bp)
TGCTGTCACTGCTGGAACCGAACTG
LOC_Os08g13010
OsAffx.29172.1.S1_at--974--6151Chr08:7718830..7718854 (25 bp)
GAGGATTGACGAGAGGCCACCACGA
LOC_Os08g13010
OsAffx.29172.1.S1_at--909--1711Chr08:7718812..7718836 (25 bp)
ACCACGAGCTGGACGATGGCTGCAA
LOC_Os08g13010
OsAffx.29172.1.S1_at--1162--2651Chr08:7718789..7718813 (25 bp)
AAGCCTGCAATTACCGGATCTGACG
LOC_Os08g13010
OsAffx.29172.1.S1_at--259--4611Chr08:7718000..7718024 (25 bp)
GCGACGGCGATTTTTCATGGCTGGT
LOC_Os08g13010
Target Sequence 
GAACCTTGGTACATTTGAAGCCTTCACGAACTGTTCTTCGGCTCTTCATTGATTCTGACATGTCCTTGACTGATGATGAG
ACATTGATATTGATGAAGGCCCTTCACAAACTGTTCTTCGGACCTTCACGGATTGATGATGATGCCAGCTTTGATGGGAA
GCTGATGATGATGGTTAACTCCGACGAGTTGTTGATGACGAAGACCAGCTCCGACGTGAAGCTGATGGACAAAGAGGACG
TCTTGCTGCTGTCACTGCTGGAACCGAACTGGAGGACGACAGGAGGATTGACGAGAGGCCACCACGAGCTGGACGATGGC
TGCAAGCCTGCAATTACCGGATCTGACGCGGCCGAGCAGGCCCAGGCGTCGGCCCACGCTGGACGAGCGGGAGCCGTACG
GAGAAGGACATGTGTTGAAGACGGATTTGATCAGCAGAGGGAGTCCGACATGGCGACGGCGATTTTTCATGGCTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis