Browse Element(s) Details


Os.53261.1.S1_at

Description gb:AK071657.1
DB_XREF= gi:32981680
TID=Os.53261.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53261 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033130G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023100C18, full insert sequence.
FL= gb:AK071657.1 gb:AK103481.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1306011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13020OsAffx.16968.1.S1_at11/118+7729150..7730754Speckle-type POZ protein, putative
LOC_Os08g13020Os.72.1.S1_x_at1/118+7729150..7730754Speckle-type POZ protein, putative
LOC_Os08g13030OsAffx.29173.1.S1_at11/118+7734031..7735475BTB/POZ domain containing protein
LOC_Os08g13030OsAffx.29173.2.S1_at2/118+7734031..7735475BTB/POZ domain containing protein
LOC_Os08g13040OsAffx.16969.1.S1_at11/118+7738035..7738394hypothetical protein
LOC_Os08g13050OsAffx.16970.1.S1_at11/118+7739762..7740521hypothetical protein
LOC_Os08g13060Os.53261.1.S1_at11/118+7750323..7751826BTB/POZ domain containing protein, expressed
LOC_Os08g13070Os.12333.1.S1_at11/118+7754349..7755879BTB/POZ domain containing protein, expressed
LOC_Os08g13080OsAffx.5798.1.S1_at11/118+7758239..7768513retrotransposon protein, putative, unclassified
LOC_Os08g13080OsAffx.20993.1.S1_at1/118+7758239..7768513retrotransposon protein, putative, unclassified
LOC_Os08g13090OsAffx.16971.1.S1_at11/118+7771507..7772546BTB/POZ domain containing protein
LOC_Os08g13100OsAffx.16972.1.S1_at11/118+7774631..7776083hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53261.1.S1_at--864--31Chr08:7750861..7750885 (25 bp)
ATTGTGAAATGATCCGGCACCTGCT
LOC_Os08g13060
Os.53261.1.S1_at--1105--1751Chr08:7750843..7750867 (25 bp)
ACCTGCTCGTTGCTGCGGACAGATA
LOC_Os08g13060
Os.53261.1.S1_at--1067--1591Chr08:7750801..7750825 (25 bp)
AGCTGCTATGCCAAGGTATCCTTTG
LOC_Os08g13060
Os.53261.1.S1_at--405--8791Chr08:7750764..7750788 (25 bp)
TGTTCACAATGTCGCGACTACGCTG
LOC_Os08g13060
Os.53261.1.S1_at--225--2351Chr08:7750627..7750651 (25 bp)
AAAGAATGGCACCTTCTGTCTTGGC
LOC_Os08g13060
Os.53261.1.S1_at--232--8471Chr08:7750594..7750618 (25 bp)
TGGCGCAGATGTCGAAGCTCAACAA
LOC_Os08g13060
Os.53261.1.S1_at--588--3451Chr08:7750478..7750502 (25 bp)
CAGGTACCGTAGTCAGTTTACTCTT
LOC_Os08g13060
Os.53261.1.S1_at--425--9871Chr08:7750453..7750477 (25 bp)
TACATTTTGGGAGCACCTTTGTGGT
LOC_Os08g13060
Os.53261.1.S1_at--516--5171Chr08:7750386..7750410 (25 bp)
GCAAGCTTTGTTTCCATTAACTGAC
LOC_Os08g13060
Os.53261.1.S1_at--664--10171Chr08:7750360..7750384 (25 bp)
TATAACCTGTTGTCCTTCCGCAAAA
LOC_Os08g13060
Os.53261.1.S1_at--142--2251Chr08:7750338..7750362 (25 bp)
AAATTTATTTTGTGCGCCCTTGATC
LOC_Os08g13060
Target Sequence 
ATTGTGAAATGATCCGGCACCTGCTCGTTGCTGCGGACAGATACGCCGTGGATAGGCTAAAGCTGCTATGCCAAGGTATC
CTTTGCAAGAATCTTAATGTTCACAATGTCGCGACTACGCTGGCACTGGCTGATCAGCATCAATGCGACAAGCTGAAGGA
TGCTTGCATCGAATTTATGTCATGTTCAAAGAAGATGAAGGGTGTAGTGGCGAGCAAAGGGTATGAGGATCTCCAAAGAA
TGGCACCTTCTGTCTTGGCGGATGCCGTGGCGCAGATGTCGAAGCTCAACAAAATGTCAAGGGGTAGTGTTCCACAAGAT
GAGTCTAAGAGCTGTTAGCTTAATTTATAAGGGATATGGGTATTCTTTCTTCTCTTCCTAAATCAGGTACCGTAGTCAGT
TTACTCTTTACATTTTGGGAGCACCTTTGTGGTGCTTATCTGTTTATATGATAGATAGGTTTATTTTATCTCTTNGCAAG
CTTTGTTTCCATTAACTGACATATAACCTGTTGTCCTTCCGCAAAATTTATTTTGTGCGCCCTTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis