Browse Element(s) Details


OsAffx.16971.1.S1_at

Description tigr:9636.m01291
TID=OsAffx.16971.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1309011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13060Os.53261.1.S1_at11/118+7750323..7751826BTB/POZ domain containing protein, expressed
LOC_Os08g13070Os.12333.1.S1_at11/118+7754349..7755879BTB/POZ domain containing protein, expressed
LOC_Os08g13080OsAffx.5798.1.S1_at11/118+7758239..7768513retrotransposon protein, putative, unclassified
LOC_Os08g13080OsAffx.20993.1.S1_at1/118+7758239..7768513retrotransposon protein, putative, unclassified
LOC_Os08g13090OsAffx.16971.1.S1_at11/118+7771507..7772546BTB/POZ domain containing protein
LOC_Os08g13100OsAffx.16972.1.S1_at11/118+7774631..7776083hypothetical protein
LOC_Os08g13110OsAffx.16973.1.S1_at10/118+7776999..7777499hypothetical protein
LOC_Os08g13120Os.40855.2.S1_x_at3/118+7783454..7784605hypothetical protein
LOC_Os08g13120Os.40855.4.S1_x_at2/118+7783454..7784605hypothetical protein
LOC_Os08g13120Os.40360.1.S1_x_at1/118+7783454..7784605hypothetical protein
LOC_Os08g13130OsAffx.29174.1.S1_at11/118+7791882..7796733hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16971.1.S1_at--945--2911Chr08:7772010..7772034 (25 bp)
AAGGAGGCGGCCGATGTCACATTCT
LOC_Os08g13090
OsAffx.16971.1.S1_at--122--7611Chr08:7771889..7771913 (25 bp)
GGGCACAGGTCTTACCCATCAAAGA
LOC_Os08g13090
OsAffx.16971.1.S1_at--932--1671Chr08:7771859..7771883 (25 bp)
AGCCTGATGTTTTCAAGGCCCTGCT
LOC_Os08g13090
OsAffx.16971.1.S1_at--689--2291Chr08:7771772..7771796 (25 bp)
AAATGATTCGGCACTTGCTCGTGGC
LOC_Os08g13090
OsAffx.16971.1.S1_at--47--4531Chr08:7771749..7771773 (25 bp)
GCCGCGGATCGTTACGCCATGGAGA
LOC_Os08g13090
OsAffx.16971.1.S1_at--380--8691Chr08:7771681..7771705 (25 bp)
TGTGCAGACTGTGGCAGCTACCTTG
LOC_Os08g13090
OsAffx.16971.1.S1_at--953--9971Chr08:7771663..7771687 (25 bp)
TACCTTGGCTCTAGCTGATCAACAT
LOC_Os08g13090
OsAffx.16971.1.S1_at--652--371Chr08:7771646..7771670 (25 bp)
ATCAACATCATTGTGCGTCACTCAG
LOC_Os08g13090
OsAffx.16971.1.S1_at--281--4651Chr08:7771632..7771656 (25 bp)
GCGTCACTCAGGGATGCTTGCATTG
LOC_Os08g13090
OsAffx.16971.1.S1_at--590--6071Chr08:7771608..7771632 (25 bp)
GAGTTTATGTCCTCTTCTTCAATGG
LOC_Os08g13090
OsAffx.16971.1.S1_at--840--2191Chr08:7771545..7771569 (25 bp)
ACAAATTGTCCTTCAGTCTTGGTGG
LOC_Os08g13090
Target Sequence 
AAGGAGGCGGCCGATGTCACATTCTATGTCGGGGAGGATACCTTTGCGGCGCACAAGGTCGTGCTCGCGATGCGATCACC
GGTCTTCAAGGCGGAGCTCTTTGGCCCGATGAGGGAGGCGGGGGCACAGGTCTTACCCATCAAAGACATTCAGCCTGATG
TTTTCAAGGCCCTGCTCCATTTCATCTACACTGATTCATTGTCTATCATTGATGATCTTGTGGGAGATGACCGTGGTGAA
ATGATTCGGCACTTGCTCGTGGCCGCGGATCGTTACGCCATGGAGAGGCTGAAGCTGATATGTGAAAGTGACCTCTGTGA
GAATCTTAATGTGCAGACTGTGGCAGCTACCTTGGCTCTAGCTGATCAACATCATTGTGCGTCACTCAGGGATGCTTGCA
TTGAGTTTATGTCCTCTTCTTCAATGGATGATATTGTGGCGACACAGGGGTTTGTAGATCTCAAAACAAATTGTCCTTCA
GTCTTGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis