Browse Element(s) Details


OsAffx.16972.1.S1_at

Description tigr:9636.m01292
TID=OsAffx.16972.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1310011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13060Os.53261.1.S1_at11/118+7750323..7751826BTB/POZ domain containing protein, expressed
LOC_Os08g13070Os.12333.1.S1_at11/118+7754349..7755879BTB/POZ domain containing protein, expressed
LOC_Os08g13080OsAffx.5798.1.S1_at11/118+7758239..7768513retrotransposon protein, putative, unclassified
LOC_Os08g13080OsAffx.20993.1.S1_at1/118+7758239..7768513retrotransposon protein, putative, unclassified
LOC_Os08g13090OsAffx.16971.1.S1_at11/118+7771507..7772546BTB/POZ domain containing protein
LOC_Os08g13100OsAffx.16972.1.S1_at11/118+7774631..7776083hypothetical protein
LOC_Os08g13110OsAffx.16973.1.S1_at10/118+7776999..7777499hypothetical protein
LOC_Os08g13120Os.40855.2.S1_x_at3/118+7783454..7784605hypothetical protein
LOC_Os08g13120Os.40855.4.S1_x_at2/118+7783454..7784605hypothetical protein
LOC_Os08g13120Os.40360.1.S1_x_at1/118+7783454..7784605hypothetical protein
LOC_Os08g13130OsAffx.29174.1.S1_at11/118+7791882..7796733hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16972.1.S1_at--129--2791Chr08:7775135..7775470 (25 bp)
AAGAGAGCAGCACTCCATTGGGCCA
LOC_Os08g13100
OsAffx.16972.1.S1_at--688--2071Chr08:7775111..7775135 (25 bp)
ACTTGTGCATTCTGGCCTTGTGGGC
LOC_Os08g13100
OsAffx.16972.1.S1_at--598--7571Chr08:7775090..7775114 (25 bp)
GGGCGTTGCATTTGTAGGTTCGAAA
LOC_Os08g13100
OsAffx.16972.1.S1_at--320--5531Chr08:7775069..7775093 (25 bp)
GAAACAAATAGGTCGCCTTGCCTTC
LOC_Os08g13100
OsAffx.16972.1.S1_at--49--1711Chr08:7774881..7774905 (25 bp)
ACCAAGTCGATGTCCGCCGTGAAGA
LOC_Os08g13100
OsAffx.16972.1.S1_at--1026--8251Chr08:7774794..7774818 (25 bp)
GGCAGCTTCATCAGATCCGGTACAC
LOC_Os08g13100
OsAffx.16972.1.S1_at--28--7851Chr08:7774776..7774800 (25 bp)
GGTACACCACCAGTGATCGGATCTT
LOC_Os08g13100
OsAffx.16972.1.S1_at--732--8831Chr08:7774763..7774787 (25 bp)
TGATCGGATCTTTGGTGACTACCCC
LOC_Os08g13100
OsAffx.16972.1.S1_at--926--5691Chr08:7774747..7774771 (25 bp)
GACTACCCCTTACTGTCACGAAAAG
LOC_Os08g13100
OsAffx.16972.1.S1_at--451--5511Chr08:7774728..7774752 (25 bp)
GAAAAGTTAGAATGCCGTCCCCAAG
LOC_Os08g13100
OsAffx.16972.1.S1_at--80--2611Chr08:7774676..7774700 (25 bp)
AACGCCTATCACACTTGATTGGTCA
LOC_Os08g13100
Target Sequence 
AAGAGAGCAGCACTCCATTGGGCCACTTGTGCATTCTGGCCTTGTGGGCGTTGCATTTGTAGGTTCGAAACAAATAGGTC
GCCTTGCCTTCCTCACCGTCTTCTCCTCCTCCTCGTCCGCCGCCACCGCTGGCGGCCATCACCGCAATGTTCGTCTGGTC
CGTCACTTCCCCCTCCTCCCCTCCTCCTCCTCTCCAATTTCTGAAACACCATGCTCCCCCTCTTGCAGCGGCAAGCATGG
CGGTGCCGAGGAGGACCAAGTCGATGTCCGCCGTGAAGACAAAGCAAGGCGTGCACGTGTTGGAGGTCCTGGGGTACAGC
CGGCACAAGGGCATGGGGGGCGGCAGCTTCATCAGATCCGGTACACCACCAGTGATCGGATCTTTGGTGACTACCCCTTA
CTGTCACGAAAAGTTAGAATGCCGTCCCCAAGAACTTTGTTGACAGTATGCCATCACAAAACGCCTATCACACTTGATTG
GTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16972.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis