Browse Element(s) Details


OsAffx.1685.1.S1_at

Description gb:NM_184474.1
DB_XREF= gi:34896037
TID=OsAffx.1685.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Similar to Lycopersicon pimpinellifolium leucine rich repeat protein Cf-2.2 gene (U42445) (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0668011/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06620Os.9437.1.S1_at11/111+3119707..3120853expressed protein
LOC_Os01g06630NANA1+3121609..3122002Small hydrophilic plant seed protein
LOC_Os01g06640Os.1443.1.S1_a_at11/111+3125794..3127451Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g06650OsAffx.21870.3.S1_x_at1/111+3131019..3132211hypothetical protein
LOC_Os01g06650OsAffx.21870.2.S1_x_at1/111+3131019..3132211hypothetical protein
LOC_Os01g06660Os.1445.1.S1_at11/111+3132906..3137019Pyruvate decarboxylase isozyme 1, putative, expressed
LOC_Os01g06670Os.32879.1.S1_at11/111+3140403..3143614Leucine Rich Repeat family protein, expressed
LOC_Os01g06670Os.32879.1.S2_at11/111+3140403..3143614Leucine Rich Repeat family protein, expressed
LOC_Os01g06680OsAffx.1685.1.S1_at11/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.22766.1.S1_at11/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.25437.1.S1_at2/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.15781.1.S1_at2/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680Os.8855.1.S1_at1/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06690OsAffx.24927.2.S1_x_at11/111+3153981..3155789hypothetical protein
LOC_Os01g06690OsAffx.24927.1.S1_x_at7/111+3153981..3155789hypothetical protein
LOC_Os01g06700OsAffx.30352.2.S1_at11/111+3158122..3164468retrotransposon protein, putative, unclassified
LOC_Os01g06710OsAffx.30352.3.S1_at11/111+3164802..3168215hypothetical protein
LOC_Os01g06710Os.18947.1.S1_at2/111+3164802..3168215hypothetical protein
LOC_Os01g06710Os.39421.1.S1_at2/111+3164802..3168215hypothetical protein
LOC_Os01g06710OsAffx.30352.1.S1_at1/111+3164802..3168215hypothetical protein
LOC_Os01g06710Os.27342.1.S2_at1/111+3164802..3168215hypothetical protein
LOC_Os01g06710OsAffx.20967.1.S1_x_at1/111+3164802..3168215hypothetical protein
LOC_Os01g06720OsAffx.23138.1.S1_at10/111+3173346..3176404Leucine Rich Repeat family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1685.1.S1_at--919--7951Chr01:3146702..3146726 (25 bp)
GGATCGCAAATTTAACCTCCTTGGT
LOC_Os01g06680
OsAffx.1685.1.S1_at--1039--9491Chr01:3146674..3146698 (25 bp)
TCTCCGGTTCTCTAATTGTGGTCTA
LOC_Os01g06680
OsAffx.1685.1.S1_at--890--9451Chr01:3146649..3146673 (25 bp)
TCTGGACCGATACCTTCTTCAATAG
LOC_Os01g06680
OsAffx.1685.1.S1_at--292--751Chr01:3146529..3146553 (25 bp)
ATGTATCTCCATTCGAACAACCTCA
LOC_Os01g06680
OsAffx.1685.1.S1_at--546--1951Chr01:3146505..3146529 (25 bp)
ACTGGTACTGTGGAGCTCAGCTCAT
LOC_Os01g06680
OsAffx.1685.1.S1_at--819--3711Chr01:3146472..3146496 (25 bp)
CTACCTCACCTCTTTAGTTTGAATC
LOC_Os01g06680
OsAffx.1685.1.S1_at--410--10331Chr01:3146447..3146471 (25 bp)
TTTCAGGCAACAGACTCACCGTAGT
LOC_Os01g06680
OsAffx.1685.1.S1_at--1162--6231Chr01:3146421..3146445 (25 bp)
GATGGTGACGTTAACTCTTCGCATG
LOC_Os01g06680
OsAffx.1685.1.S1_at--538--7051Chr01:3146363..3146387 (25 bp)
GTAACATGTCCAAGTTCCCTGATGC
LOC_Os01g06680
OsAffx.1685.1.S1_at--389--3911Chr01:3146285..3146309 (25 bp)
CTGGCGCTATACCTCAATGGGCATG
LOC_Os01g06680
OsAffx.1685.1.S1_at--241--5871Chr01:3146251..3146275 (25 bp)
GAGCCAGTTGGTTCTCCTAAACATA
LOC_Os01g06680
Target Sequence 
GGATCGCAAATTTAACCTCCTTGGTACTTCTCCGGTTCTCTAATTGTGGTCTATCTGGACCGATACCTTCTTCAATAGGT
AATCTCAAGAACCTAACTAGATTAGAATTGTATAGGTGCAATTTTTATGGTACAATATCGCCACACATTTTCAATCTAAC
TCACTTAAAAGTAATGTATCTCCATTCGAACAACCTCACTGGTACTGTGGAGCTCAGCTCATTCTGGAAACTACCTCACC
TCTTTAGTTTGAATCTTTCAGGCAACAGACTCACCGTAGTAGATGGTGACGTTAACTCTTCGCATGTTAATAATATGGAC
ATATTGCGTCTAGCATCATGTAACATGTCCAAGTTCCCTGATGCCTTGAGGCACATGAGTTTTATTCATTATCTTGACCT
TTCAGACAATAAAATCCCTGGCGCTATACCTCAATGGGCATGGGAAACCTGGAGCCAGTTGGTTCTCCTAAACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1685.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis