Browse Element(s) Details


Os.1443.1.S1_a_at

Description gb:AK106292.1
DB_XREF= gi:32991501
TID=Os.1443.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1443 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs C26093(C11622),AU090634(C12429) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana chromosome II BAC T3K9; hypothetical protein (AC004261) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-B04, full insert sequence.
FL= gb:AK106292.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0664011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06590Os.1438.1.S1_at11/111+3096448..3102029Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g06600Os.1440.1.S1_at11/111+3104919..3110765Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os01g06600Os.1440.2.S1_x_at11/111+3104919..3110765Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os01g06610NANA1+3112964..3113704retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06620Os.9437.1.S1_at11/111+3119707..3120853expressed protein
LOC_Os01g06630NANA1+3121609..3122002Small hydrophilic plant seed protein
LOC_Os01g06640Os.1443.1.S1_a_at11/111+3125794..3127451Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g06650OsAffx.21870.3.S1_x_at1/111+3131019..3132211hypothetical protein
LOC_Os01g06650OsAffx.21870.2.S1_x_at1/111+3131019..3132211hypothetical protein
LOC_Os01g06660Os.1445.1.S1_at11/111+3132906..3137019Pyruvate decarboxylase isozyme 1, putative, expressed
LOC_Os01g06670Os.32879.1.S1_at11/111+3140403..3143614Leucine Rich Repeat family protein, expressed
LOC_Os01g06670Os.32879.1.S2_at11/111+3140403..3143614Leucine Rich Repeat family protein, expressed
LOC_Os01g06680OsAffx.1685.1.S1_at11/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.22766.1.S1_at11/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.25437.1.S1_at2/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.15781.1.S1_at2/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680Os.8855.1.S1_at1/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1443.1.S1_a_at--967--4371Chr01:3126869..3126893 (25 bp)
CCAACGAAGTCTCCATCGAATGCTT
LOC_Os01g06640
Os.1443.1.S1_a_at--202--531Chr01:3126883..3126907 (25 bp)
ATCGAATGCTTCACCGGAGACGCTG
LOC_Os01g06640
Os.1443.1.S1_a_at--631--3351Chr01:3127006..3127030 (25 bp)
CACGCATTCCATGGCCTGAGGCTGA
LOC_Os01g06640
Os.1443.1.S1_a_at--718--1051Chr01:3127066..3127090 (25 bp)
AGGGTGCAGCATGTGTTCATATTGT
LOC_Os01g06640
Os.1443.1.S1_a_at--1125--4931Chr01:3127103..3127127 (25 bp)
GCATTGCAGGTGGTGTGAGCCTCAA
LOC_Os01g06640
Os.1443.1.S1_a_at--242--3751Chr01:3127123..3127147 (25 bp)
CTCAAGTCTCTGAAGGAGGCTGTCA
LOC_Os01g06640
Os.1443.1.S1_a_at--726--9631Chr01:3127145..3127169 (25 bp)
TCAGGCAGGCACTAGCCAAGGTTGC
LOC_Os01g06640
Os.1443.1.S1_a_at--1099--2891Chr01:3127162..3127186 (25 bp)
AAGGTTGCCTCTCCTGAATTGGTAT
LOC_Os01g06640
Os.1443.1.S1_a_at--844--851Chr01:3127187..3127211 (25 bp)
ATGGCAGCAGTCACTTTCAGAGCAA
LOC_Os01g06640
Os.1443.1.S1_a_at--483--6171Chr01:3127218..3127242 (25 bp)
GAGGATCCTGGAGTCACATTGCTCA
LOC_Os01g06640
Os.1443.1.S1_a_at--825--7091Chr01:3127230..3127254 (25 bp)
GTCACATTGCTCAATTATGTCCATA
LOC_Os01g06640
Target Sequence 
CCAACGAAGTCTCCATCGAATGCTTCACCGGAGACGCTGCCACCGCCGCCACCACTGTCGCCGGCAACCACAAGACCTTG
TACATCAAGGCTTCCATCAGCTGCGACGACCGGCCGGACCTCATCGCCGGGATCACCCACGCATTCCATGGCCTGAGGCT
GAGGACGGTCAGAGCAGAGATGACATCACTGGGAGGAAGGGTGCAGCATGTGTTCATATTGTGCAGGGAGGAAGGCATTG
CAGGTGGTGTGAGCCTCAAGTCTCTGAAGGAGGCTGTCAGGCAGGCACTAGCCAAGGTTGCCTCTCCTGAATTGGTATAT
GGCAGCAGTCACTTTCAGAGCAAGAGGCAGAGGATCCTGGAGTCACATTGCTCAATTATGTCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1443.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis