Browse Element(s) Details


Os.1440.2.S1_x_at

Description gb:NM_184464.1
DB_XREF= gi:34896017
TID=Os.1440.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.1440 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU056822(S20908),C26441(C12328), C28477(C61243) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana putative acyl-coA dehydrogenase (AF049236) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) ESTs AU056822(S20908),C26441(C12328), C28477(C61243) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana putative acyl-coA dehydrogenase (AF049236) (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0660011/11Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06540OsAffx.10938.1.S1_at11/111+3080197..3081370PHD finger protein, putative
LOC_Os01g06550Os.12454.1.S1_a_at11/111+3082254..3087689zinc finger family protein, putative, expressed
LOC_Os01g06560Os.4770.1.S1_a_at11/111+3088161..3089652tumor-related protein, putative, expressed
LOC_Os01g06570OsAffx.23136.1.S1_at4/111+3092012..3092732hypothetical protein
LOC_Os01g06570Os.57403.1.S1_at1/111+3092012..3092732hypothetical protein
LOC_Os01g06580Os.1437.1.S1_at11/111+3094160..3095324Fasciclin domain containing protein, expressed
LOC_Os01g06590Os.1438.1.S1_at11/111+3096448..3102029Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g06600Os.1440.1.S1_at11/111+3104919..3110765Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os01g06600Os.1440.2.S1_x_at11/111+3104919..3110765Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os01g06610NANA1+3112964..3113704retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06620Os.9437.1.S1_at11/111+3119707..3120853expressed protein
LOC_Os01g06630NANA1+3121609..3122002Small hydrophilic plant seed protein
LOC_Os01g06640Os.1443.1.S1_a_at11/111+3125794..3127451Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g06650OsAffx.21870.3.S1_x_at1/111+3131019..3132211hypothetical protein
LOC_Os01g06650OsAffx.21870.2.S1_x_at1/111+3131019..3132211hypothetical protein
LOC_Os01g06660Os.1445.1.S1_at11/111+3132906..3137019Pyruvate decarboxylase isozyme 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006552biological_processleucine catabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0046459biological_processshort-chain fatty acid metabolism
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0005777cellular_componentperoxisome
GO:0003997molecular_functionacyl-CoA oxidase activity
GO:0008470molecular_functionisovaleryl-CoA dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1440.2.S1_x_at--1141--7691Chr01:3106436..3106460 (25 bp)
GGGTGCTCCTGGCTTGAAAGCTACA
LOC_Os01g06600
Os.1440.2.S1_x_at--440--6391Chr01:3106333..3106357 (25 bp)
GATCGACTGCCAGGTGTCAATTCAT
LOC_Os01g06600
Os.1440.2.S1_x_at--1116--2891Chr01:3106198..3106221 (24 bp)
AAGGTCCTTGCTATTTCACGTGTCA
LOC_Os01g06600
Os.1440.2.S1_x_at--720--6271Chr01:3106030..3106156 (25 bp)
GATGTCTGCCATCGGAAACAGTTTG
LOC_Os01g06600
Os.1440.2.S1_x_at--862--7971Chr01:3106006..3106030 (25 bp)
GGAGTTCCTCTAGTAGCTTTTCAGC
LOC_Os01g06600
Os.1440.2.S1_x_at--724--6331Chr01:3105938..3105962 (25 bp)
GATGCTTCTTGTTGGCTGGCGACTA
LOC_Os01g06600
Os.1440.2.S1_x_at--1067--6611Chr01:3105748..3105772 (25 bp)
GTTGGACTTCCAGAATGGCTCGTGA
LOC_Os01g06600
Os.1440.2.S1_x_at--1127--8811Chr01:3105726..3105750 (25 bp)
TGAGGTGGTTTCTCTCGGTCGAGAA
LOC_Os01g06600
Os.1440.2.S1_x_at--125--4951Chr01:3105574..3105598 (25 bp)
GCATTCTGTGACCTGGAGCCTATAT
LOC_Os01g06600
Os.1440.2.S1_x_at--1025--5111Chr01:3105537..3105561 (25 bp)
GCACATACGACATCAACAGCCTGGT
LOC_Os01g06600
Os.1440.2.S1_x_at--1008--2231Chr01:3105501..3105525 (25 bp)
AAATAACTGGGATCGCAAGCTTCAA
LOC_Os01g06600
Target Sequence 
GGGTGCTCCTGGCTTGAAAGCTACAAAGATTGAGAACAAAATTGGTCTCAGAATGGTTCAGAACGGTGATATAGTTTTTA
ATAAAGTATTTGTCCCTGAGGAAGATCGACTGCCAGGTGTCAATTCATTTCAGGATATAAGCAAGGTCCTTGCTATTTCA
CGTGTCATGGTGGCATGGCAACCGATTGGTATATCAATGGGGGTGTTTGATGTCTGCCATCGGAAACAGTTTGGAGTTCC
TCTAGTAGCTTTTCAGCTGAACCAAGAAAAACTTGTGCGAATGCTTGGTAACATCCAAGCGATGCTTCTTGTTGGCTGGC
GACTATGCAAGCTTTATGAGTCAGGGAAAATGACACCAGGGCATGCTAGTTTAGGGAAGGGTTGGACTTCCAGAATGGCT
CGTGAGGTGGTTTCTCTCGGTCGAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAGGCATTCTG
TGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATCAACAGCCTGGTGACTGGTAGAGAAATAACTGGGATCG
CAAGCTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1440.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis