Browse Element(s) Details


Os.9437.1.S1_at

Description gb:AU090656
DB_XREF= gi:7839245
DB_XREF=AU090656
CLONE=E4105
TID=Os.9437.1
CNT=8
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.9437 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023014A07, full insert sequence
FL= gb:AK069408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0662011/11expressed protein
LOC_Os12g323803/1140S ribosomal protein S29, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06580Os.1437.1.S1_at11/111+3094160..3095324Fasciclin domain containing protein, expressed
LOC_Os01g06590Os.1438.1.S1_at11/111+3096448..3102029Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g06600Os.1440.1.S1_at11/111+3104919..3110765Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os01g06600Os.1440.2.S1_x_at11/111+3104919..3110765Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os01g06610NANA1+3112964..3113704retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06620Os.9437.1.S1_at11/111+3119707..3120853expressed protein
LOC_Os01g06630NANA1+3121609..3122002Small hydrophilic plant seed protein
LOC_Os01g06640Os.1443.1.S1_a_at11/111+3125794..3127451Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g06650OsAffx.21870.3.S1_x_at1/111+3131019..3132211hypothetical protein
LOC_Os01g06650OsAffx.21870.2.S1_x_at1/111+3131019..3132211hypothetical protein
LOC_Os01g06660Os.1445.1.S1_at11/111+3132906..3137019Pyruvate decarboxylase isozyme 1, putative, expressed
LOC_Os01g06670Os.32879.1.S1_at11/111+3140403..3143614Leucine Rich Repeat family protein, expressed
LOC_Os01g06670Os.32879.1.S2_at11/111+3140403..3143614Leucine Rich Repeat family protein, expressed
LOC_Os01g06680OsAffx.1685.1.S1_at11/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.22766.1.S1_at11/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.25437.1.S1_at2/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.15781.1.S1_at2/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680Os.8855.1.S1_at1/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9437.1.S1_at--577--31327Chr08:4723266..4723290 (25 bp)
AATTTATTCTCCGTTTTGCTCTCAA
NONE
Os.9437.1.S1_at--345--59528Chr12:19512131..19512155 (25 bp)
GAGAAATTTCTTCACCATAAAACAC
LOC_Os12g32380
Os.9437.1.S1_at--200--30928Chr12:19512160..19512184 (25 bp)
AATCAAGCACTACCTTCACTATTTT
LOC_Os12g32380
Os.9437.1.S1_at--1082--51528Chr12:19512163..19512186 (24 bp)
GCAAGCACTACCTTCACTATTTTTT
LOC_Os12g32380
Os.9437.1.S1_at--61--4771Chr01:3120547..3120571 (25 bp)
GCTGCAGCAGGATCAACCGGTGCCG
LOC_Os01g06620
Os.9437.1.S1_at--185--4571Chr01:3120589..3120613 (25 bp)
GCGCGCGTCGCAATTATACATGTGT
LOC_Os01g06620
Os.9437.1.S1_at--584--10191Chr01:3120613..3120637 (25 bp)
TATTTGAGTATTGATCATCGACGAC
LOC_Os01g06620
Os.9437.1.S1_at--396--1571Chr01:3120645..3120669 (25 bp)
AGCTAGCTGGTGGACGATTGATTTC
LOC_Os01g06620
Os.9437.1.S1_at--801--7531Chr01:3120675..3120699 (25 bp)
GTGGCGATTGGATCTAATTACCCGT
LOC_Os01g06620
Os.9437.1.S1_at--436--3131Chr01:3120690..3120714 (25 bp)
AATTACCCGTGTGTGTACTACTCCG
LOC_Os01g06620
Os.9437.1.S1_at--129--3811Chr01:3120710..3120734 (25 bp)
CTCCGCTCCTCCGATTTTAAATATA
LOC_Os01g06620
Target Sequence 
AATTTATTCTCCGTTTTGCTCTCAAATTTGAATAAATATTACTCTTTTTTGAGAAATTTCTTCACCATAAAACACTATAA
ATCAAGCACTACCTTCACTATTTTTTTTGATTTTTTTTTTTTAAATTTTTGAATTTGGACGAATTTTATTAAACCGTACC
GCGCAAGCACTACCTTCACTATTTTTTTTGATTTTTTTCTTTTTTTAAAATTTTTAAATTTGGACGAATTTTATTAAACC
GTACCGCGCGGTACGGGTAACCGTACCCCCGCGGTACGGGCGGTAACCGCGCCGCGCGGTTACCGGCGGTTTTTCACACC
CTGCCTCCTGGGGGTCTCGAAGATGCAGGAGGCCAACCCGTACACTCGCGGCTGCAGCAGGATCAACCGGTGCCGCGGCT
GACGGACGGCACGCGCGCGTCGCAATTATACATGTGTATTTGAGTATTGATCATCGACGACGACGATGAGCTAGCTGGTG
GACGATTGATTTCGCGTGGTGGCGATTGGATCTAATTACCCGTGTGTGTACTACTCCGCTCCTCCGATTTTAAATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis