Browse Element(s) Details


Os.1437.1.S1_at

Description gb:AK108308.1
DB_XREF= gi:32993517
TID=Os.1437.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.1437 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) EST D25138(R3286) corresponds to a region of the predicted gene.~Similar to Pinus taeda arabinogalactan-like protein (U09556) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-F08, full insert sequence.
FL= gb:AK108308.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0658011/11Fasciclin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06530Os.1433.2.S1_at4/111+3075509..3079138retrotransposon protein, putative, unclassified
LOC_Os01g06530OsAffx.15865.1.S1_at1/111+3075509..3079138retrotransposon protein, putative, unclassified
LOC_Os01g06540OsAffx.10938.1.S1_at11/111+3080197..3081370PHD finger protein, putative
LOC_Os01g06550Os.12454.1.S1_a_at11/111+3082254..3087689zinc finger family protein, putative, expressed
LOC_Os01g06560Os.4770.1.S1_a_at11/111+3088161..3089652tumor-related protein, putative, expressed
LOC_Os01g06570OsAffx.23136.1.S1_at4/111+3092012..3092732hypothetical protein
LOC_Os01g06570Os.57403.1.S1_at1/111+3092012..3092732hypothetical protein
LOC_Os01g06580Os.1437.1.S1_at11/111+3094160..3095324Fasciclin domain containing protein, expressed
LOC_Os01g06590Os.1438.1.S1_at11/111+3096448..3102029Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g06600Os.1440.1.S1_at11/111+3104919..3110765Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os01g06600Os.1440.2.S1_x_at11/111+3104919..3110765Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os01g06610NANA1+3112964..3113704retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06620Os.9437.1.S1_at11/111+3119707..3120853expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1437.1.S1_at--681--5611Chr01:3094628..3094652 (25 bp)
GACAACCTCGTCGTGTACCAGGTGG
LOC_Os01g06580
Os.1437.1.S1_at--906--1751Chr01:3094624..3094648 (25 bp)
ACCTCGTCGTGTACCAGGTGGACAA
LOC_Os01g06580
Os.1437.1.S1_at--233--2231Chr01:3094603..3094627 (25 bp)
ACAAGGTGCTGCTCCCGATGGCCAT
LOC_Os01g06580
Os.1437.1.S1_at--23--9591Chr01:3094404..3094428 (25 bp)
TCTTGCCTTGGCGAGCGTCTGGTTG
LOC_Os01g06580
Os.1437.1.S1_at--952--6311Chr01:3094360..3094384 (25 bp)
GATGACAAGTTTGAGCGAGATCTCT
LOC_Os01g06580
Os.1437.1.S1_at--952--6031Chr01:3094344..3094368 (25 bp)
GAGATCTCTGTATTGTACGCGCCTT
LOC_Os01g06580
Os.1437.1.S1_at--1019--9931Chr01:3094329..3094353 (25 bp)
TACGCGCCTTCCATAATTTTTTCTG
LOC_Os01g06580
Os.1437.1.S1_at--818--7752Chr08:22818500..22818520 (21 bp)
GGTGTTCTTTTCTTAATGTTCTGTC
NONE
Os.1437.1.S1_at--840--2991Chr01:3094251..3094275 (25 bp)
AATGTTCTGTCCATTTTTGGTTGAA
LOC_Os01g06580
Os.1437.1.S1_at--1005--5211Chr01:3094229..3094253 (25 bp)
GAATTATTGCTCGTCATATCATTAC
LOC_Os01g06580
Os.1437.1.S1_at--507--3611Chr01:3094168..3094192 (25 bp)
CATTGGATTCCCATTTTTCTGTAAT
LOC_Os01g06580
Target Sequence 
GACAACCTCGTCGTGTACCAGGTGGACAAGGTGCTGCTCCCGATGGCCATNTACAGCACGCCGGCGCCCGCGCCCGCGCC
GCTGTCGCCGGCGACGAAGAAGAAGGGGAAGACGCCGGCCACGTCGGTCGCCGACGCGCCCGAGGCCGCCGACGCGACGC
CGGACGCGACGACCCCGTCTCTCGCGGCGGCGAGGGTGACGGCCGGTGCTGGTGTCGGGGTGGTTCTTGCCTTGGCGAGC
GTCTGGTTGGGGCTGTGACGATGAGGTTGATGACAAGTTTGAGCGAGATCTCTGTATTGTACGCGCCTTCCATAATTTTT
TCTGTTGTTTTTTTTCTCTCTTAATTTTTTTTGTTGTTGAAAAGGTGTTCTTTTCTTAATGTTCTGTCCATTTTTGGTTG
AATTATTGCTCGTCATATCATTACCNTTATTATTGTAATTGCTAGGAGTATGTAATGTATCATTGGATTCCCATTTTTCT
GTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis