Browse Element(s) Details


OsAffx.10938.1.S1_at

Description gb:NM_184457.1
DB_XREF= gi:34896003
TID=OsAffx.10938.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Similar to Oryza sativa nucleic acid binding protein (AF045571) (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0654011/11PHD finger protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06500Os.32936.1.S1_at11/111+3055366..3056519lectin, putative, expressed
LOC_Os01g06510Os.46028.1.S1_at11/111+3057796..3063837arginyl-tRNA synthetase family protein, expressed
LOC_Os01g06520Os.34779.1.S1_at11/111+3064752..3068039Leucine Rich Repeat family protein, expressed
LOC_Os01g06530Os.1433.2.S1_at4/111+3075509..3079138retrotransposon protein, putative, unclassified
LOC_Os01g06530OsAffx.15865.1.S1_at1/111+3075509..3079138retrotransposon protein, putative, unclassified
LOC_Os01g06540OsAffx.10938.1.S1_at11/111+3080197..3081370PHD finger protein, putative
LOC_Os01g06550Os.12454.1.S1_a_at11/111+3082254..3087689zinc finger family protein, putative, expressed
LOC_Os01g06560Os.4770.1.S1_a_at11/111+3088161..3089652tumor-related protein, putative, expressed
LOC_Os01g06570OsAffx.23136.1.S1_at4/111+3092012..3092732hypothetical protein
LOC_Os01g06570Os.57403.1.S1_at1/111+3092012..3092732hypothetical protein
LOC_Os01g06580Os.1437.1.S1_at11/111+3094160..3095324Fasciclin domain containing protein, expressed
LOC_Os01g06590Os.1438.1.S1_at11/111+3096448..3102029Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g06600Os.1440.1.S1_at11/111+3104919..3110765Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os01g06600Os.1440.2.S1_x_at11/111+3104919..3110765Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10938.1.S1_at--419--4291Chr01:3081099..3081212 (25 bp)
CCTCACCGAAGACCTCGAGAAGTTC
LOC_Os01g06540
OsAffx.10938.1.S1_at--341--2831Chr01:3081080..3081104 (25 bp)
AAGTTCGCCGCGCTGTGCAATCCAG
LOC_Os01g06540
OsAffx.10938.1.S1_at--824--4571Chr01:3080965..3081095 (25 bp)
GCGCTGTGCAATCCAGATCTGGACT
LOC_Os01g06540
OsAffx.10938.1.S1_at--1059--1271Chr01:3080951..3080975 (25 bp)
AGATCTGGACTGCTTGTGCCTGTAT
LOC_Os01g06540
OsAffx.10938.1.S1_at--662--5711Chr01:3080944..3080968 (25 bp)
GACTGCTTGTGCCTGTATGGGAACT
LOC_Os01g06540
OsAffx.10938.1.S1_at--476--10831Chr01:3080938..3080962 (25 bp)
TTGTGCCTGTATGGGAACTCGGACG
LOC_Os01g06540
OsAffx.10938.1.S1_at--4--4151Chr01:3080856..3080880 (25 bp)
CGCTGGGCATCAACTTCTCGCGCGA
LOC_Os01g06540
OsAffx.10938.1.S1_at--182--10591Chr01:3080842..3080866 (25 bp)
TTCTCGCGCGACACGATGTACAGGA
LOC_Os01g06540
OsAffx.10938.1.S1_at--1157--7011Chr01:3080825..3080849 (25 bp)
GTACAGGAGTGATTGGGTCGCCCTC
LOC_Os01g06540
OsAffx.10938.1.S1_at--749--7131Chr01:3080794..3080818 (25 bp)
GTCTTCTCCGATTCGTGGCTCCTCG
LOC_Os01g06540
OsAffx.10938.1.S1_at--240--1951Chr01:3080754..3080778 (25 bp)
ACGGCGCCCGACTAGATCGCGACGA
LOC_Os01g06540
Target Sequence 
CCTCACCGAAGACCTCGAGAAGTTCGCCGCGCTGTGCAATCCAGATCTGGACTGCTTGTGCCTGTATGGGAACTCGGACG
GGACGTGGGAGGTGGCGCCGCCGCCGGAGATGGTGCCGCCGGAGCTGCCGGAGCCGGCGCTGGGCATCAACTTCTCGCGC
GACACGATGTACAGGAGTGATTGGGTCGCCCTCCTCTCCGTCTTCTCCGATTCGTGGCTCCTCGCCGTCGCCTTCTTCCA
CGGCGCCCGACTAGATCGCGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis