Browse Element(s) Details


Os.34779.1.S1_at

Description gb:AK070173.1
DB_XREF= gi:32980197
TID=Os.34779.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34779 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Lycopersicon esculentum Hcr2-5D (AF053998) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041K23, full insert sequence.
FL= gb:AK070173.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0652011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06454Os.1460.2.S1_at10/111+3038282..3041148DNAJ protein, putative, expressed
LOC_Os01g06460Os.1460.1.S1_at11/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_x_at10/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_at1/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06470Os.174.1.S1_at11/111+3044234..3049067Importin alpha-2 subunit, putative, expressed
LOC_Os01g06480Os.56084.1.S1_at10/111+3048743..3049953Tha8, putative, expressed
LOC_Os01g06480Os.56084.1.S1_x_at10/111+3048743..3049953Tha8, putative, expressed
LOC_Os01g06490Os.24975.1.S1_a_at11/111+3051267..3054000Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g06500Os.32936.1.S1_at11/111+3055366..3056519lectin, putative, expressed
LOC_Os01g06510Os.46028.1.S1_at11/111+3057796..3063837arginyl-tRNA synthetase family protein, expressed
LOC_Os01g06520Os.34779.1.S1_at11/111+3064752..3068039Leucine Rich Repeat family protein, expressed
LOC_Os01g06530Os.1433.2.S1_at4/111+3075509..3079138retrotransposon protein, putative, unclassified
LOC_Os01g06530OsAffx.15865.1.S1_at1/111+3075509..3079138retrotransposon protein, putative, unclassified
LOC_Os01g06540OsAffx.10938.1.S1_at11/111+3080197..3081370PHD finger protein, putative
LOC_Os01g06550Os.12454.1.S1_a_at11/111+3082254..3087689zinc finger family protein, putative, expressed
LOC_Os01g06560Os.4770.1.S1_a_at11/111+3088161..3089652tumor-related protein, putative, expressed
LOC_Os01g06570OsAffx.23136.1.S1_at4/111+3092012..3092732hypothetical protein
LOC_Os01g06570Os.57403.1.S1_at1/111+3092012..3092732hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34779.1.S1_at--622--5471Chr01:3065304..3065328 (25 bp)
GAACTTGTTCTGCTAAACGTGCTCA
LOC_Os01g06520
Os.34779.1.S1_at--659--11Chr01:3065250..3065274 (25 bp)
ATTCCACCTCAGCTTGGTCGTTTAA
LOC_Os01g06520
Os.34779.1.S1_at--1114--7791Chr01:3065235..3065259 (25 bp)
GGTCGTTTAACCCAGCTTGAGTCGT
LOC_Os01g06520
Os.34779.1.S1_at--145--8071Chr01:3065184..3065208 (25 bp)
GGAGAAATCCCACAGCAGTTGGCAT
LOC_Os01g06520
Os.34779.1.S1_at--4--8531Chr01:3065156..3065180 (25 bp)
TGGACTTCCTCACAGTGTTGAACCT
LOC_Os01g06520
Os.34779.1.S1_at--884--3411Chr01:3065102..3065126 (25 bp)
CAGAATCGCCTCATTTCTTGACATT
LOC_Os01g06520
Os.34779.1.S1_at--584--7291Chr01:3065044..3065068 (25 bp)
GTGCGGTCGTCCACTGTCGAAAGGA
LOC_Os01g06520
Os.34779.1.S1_at--354--9691Chr01:3064974..3064998 (25 bp)
TCACTTGACGTTTTGCTATTCCTTT
LOC_Os01g06520
Os.34779.1.S1_at--122--7951Chr01:3064926..3064950 (25 bp)
GGATTTGCCCTTTCAATTGTGGTTA
LOC_Os01g06520
Os.34779.1.S1_at--998--91Chr01:3064893..3064917 (25 bp)
ATTCCCATCAGAAAGCGGTCTCGAG
LOC_Os01g06520
Os.34779.1.S1_at--1022--5871Chr01:3064859..3064883 (25 bp)
GAGCCCTCTGAATTATGTATCGAAG
LOC_Os01g06520
Target Sequence 
GAACTTGTTCTGCTAAACGTGCTCAACATATCACACAACTCACTGACGGGGCCGATTCCACCTCAGCTTGGTCGTTTAAC
CCAGCTTGAGTCGTTGGACATCTCATCAAATGAGCTTTCAGGAGAAATCCCACAGCAGTTGGCATCCTTGGACTTCCTCA
CAGTGTTGAACCTGTCCTACAACAAGCTGGAGGGGGAAATACCAGAATCGCCTCATTTCTTGACATTCTCCAATAGTTCA
TTTCTGGGGAACGATGGTTTGTGCGGTCGTCCACTGTCGAAAGGATGCATCAACATTACATCTCTGAATGTGATCCCTTC
CAAGAAGAATTCACTTGACGTTTTGCTATTCCTTTTTGCTGGATTGGGATTCGGCTTTGGATTTGCCCTTTCAATTGTGG
TTATATGGGGAATTCCCATCAGAAAGCGGTCTCGAGTAAGGCAGAGAGCCCTCTGAATTATGTATCGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis