Browse Element(s) Details


Os.174.1.S1_at

Description gb:D78504.1
DB_XREF= gi:3287493
TID=Os.174.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.174 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative importin alpha (P0011G08.36), mRNA
DEF=Oryza sativa (japonica cultivar-group) mRNA, similar to yeast SRP1, complete cds.
FL= gb:D78504.1 gb:AK103127.1 gb:AK058679.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0647011/11Importin alpha-2 subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06370OsAffx.10555.1.S1_at11/111+3022632..3023192hypothetical protein
LOC_Os01g06380OsAffx.22769.1.S1_at11/111+3023615..3024883hypothetical protein
LOC_Os01g06390OsAffx.10553.1.S1_at11/111+3027396..3027965hypothetical protein
LOC_Os01g06400Os.30624.1.S1_at11/111+3028281..3029811expressed protein
LOC_Os01g06400Os.30624.2.S1_x_at8/111+3028281..3029811expressed protein
LOC_Os01g06410OsAffx.23135.1.S1_at11/111+3031030..3031590hypothetical protein
LOC_Os01g06420OsAffx.22993.1.S1_at11/111+3031861..3032493hypothetical protein
LOC_Os01g06430OsAffx.23042.1.S1_at11/111+3033492..3034091hypothetical protein
LOC_Os01g06440Os.31782.1.S1_at11/111+3034491..3035510expressed protein
LOC_Os01g06450OsAffx.10552.1.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed
LOC_Os01g06450OsAffx.10552.2.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed
LOC_Os01g06454Os.1460.2.S1_at10/111+3038282..3041148DNAJ protein, putative, expressed
LOC_Os01g06460Os.1460.1.S1_at11/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_x_at10/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_at1/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06470Os.174.1.S1_at11/111+3044234..3049067Importin alpha-2 subunit, putative, expressed
LOC_Os01g06480Os.56084.1.S1_at10/111+3048743..3049953Tha8, putative, expressed
LOC_Os01g06480Os.56084.1.S1_x_at10/111+3048743..3049953Tha8, putative, expressed
LOC_Os01g06490Os.24975.1.S1_a_at11/111+3051267..3054000Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g06500Os.32936.1.S1_at11/111+3055366..3056519lectin, putative, expressed
LOC_Os01g06510Os.46028.1.S1_at11/111+3057796..3063837arginyl-tRNA synthetase family protein, expressed
LOC_Os01g06520Os.34779.1.S1_at11/111+3064752..3068039Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006606biological_processprotein import into nucleus
GO:0006886biological_processintracellular protein transport
GO:0006952biological_processdefense response
GO:0005634cellular_componentnucleus
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.174.1.S1_at--621--8831Chr01:3048236..3048260 (25 bp)
TGATTTTTGCCAGTGAGGCCACGCC
LOC_Os01g06470
Os.174.1.S1_at--694--8171Chr01:3048306..3048330 (25 bp)
GGAAGCAGCATACACCCTAGGAAAT
LOC_Os01g06470
Os.174.1.S1_at--760--2271Chr01:3048327..3048351 (25 bp)
AAATCTGTGTGTTGTCCCTACTGGA
LOC_Os01g06470
Os.174.1.S1_at--540--3051Chr01:3048372..3048396 (25 bp)
AATCGTGGAACATCTAGTCGCTATC
LOC_Os01g06470
Os.174.1.S1_at--575--8091Chr01:3048406..3048430 (25 bp)
GGAGCCCTTCCAGGATTTATACACT
LOC_Os01g06470
Os.174.1.S1_at--618--10351Chr01:3048421..3048445 (25 bp)
TTTATACACTTGGTCAGGTCTGCTG
LOC_Os01g06470
Os.174.1.S1_at--1008--7851Chr01:3048637..3048661 (25 bp)
GGTATCCCAATAAGCAAGGCCCAAA
LOC_Os01g06470
Os.174.1.S1_at--925--8031Chr01:3048695..3048719 (25 bp)
GGAGAGGTTTCAATTCCACGAGAAC
LOC_Os01g06470
Os.174.1.S1_at--719--7371Chr01:3048788..3048812 (25 bp)
GTGACTCAACTAATTACCATTCGTA
LOC_Os01g06470
Os.174.1.S1_at--493--3411Chr01:3048834..3048858 (25 bp)
CAGCAGCTGTTCATGTGTTCGTACT
LOC_Os01g06470
Os.174.1.S1_at--400--2291Chr01:3048863..3048887 (25 bp)
AAATGCATTCTCAGTTTCTAACAGC
LOC_Os01g06470
Target Sequence 
TGATTTTTGCCAGTGAGGCCACGCCTGTGCTGATACGCCTTGTCACCAGCNNGCAATTTGATATTCGCAGGGAAGCAGCA
TACACCCTAGGAAATCTGTGTGTTGTCCCTACTGGAAATTGCGAACTCCCAAAGATAATCGTGGAACATCTAGTCGCTAT
CGTAGATGGTGGAGCCCTTCCAGGATTTATACACTTGGTCAGGTCTGCTGATGTAGATACCGCAGGGCTTGGTCTTCAGT
TCCTAGAACTGGTGATGAGGGGGTATCCCAATAAGCAAGGCCCAAAGCTTGTGGAAATGGAGGACGGCATTGAGGCCATG
GAGAGGTTTCAATTCCACGAGAACGAGCAGATGAGGAACATGGCCAATGGTTTGGTCGACGAATACTTCGGTGAGGATTA
TGGCCTCGACGAGTGACTCAACTAATTACCATTCGTACATCAGGTTAAATTGTAATGGCAGCAGCTGTTCATGTGTTCGT
ACTGTAAAAATGCATTCTCAGTTTCTAACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.174.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis