Browse Element(s) Details


Os.1460.3.S1_at

Description gb:NM_184448.1
DB_XREF= gi:34895985
GEN=P0011G08.35
TID=Os.1460.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.1460 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0011G08.35 (P0011G08.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0011G08.35 (P0011G08.35), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g064601/11SAT5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06360Os.38172.1.S1_x_at5/111+3013666..3018286transposon protein, putative, unclassified
LOC_Os01g06360Os.43567.1.S1_x_at2/111+3013666..3018286transposon protein, putative, unclassified
LOC_Os01g06370OsAffx.10555.1.S1_at11/111+3022632..3023192hypothetical protein
LOC_Os01g06380OsAffx.22769.1.S1_at11/111+3023615..3024883hypothetical protein
LOC_Os01g06390OsAffx.10553.1.S1_at11/111+3027396..3027965hypothetical protein
LOC_Os01g06400Os.30624.1.S1_at11/111+3028281..3029811expressed protein
LOC_Os01g06400Os.30624.2.S1_x_at8/111+3028281..3029811expressed protein
LOC_Os01g06410OsAffx.23135.1.S1_at11/111+3031030..3031590hypothetical protein
LOC_Os01g06420OsAffx.22993.1.S1_at11/111+3031861..3032493hypothetical protein
LOC_Os01g06430OsAffx.23042.1.S1_at11/111+3033492..3034091hypothetical protein
LOC_Os01g06440Os.31782.1.S1_at11/111+3034491..3035510expressed protein
LOC_Os01g06450OsAffx.10552.1.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed
LOC_Os01g06450OsAffx.10552.2.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed
LOC_Os01g06454Os.1460.2.S1_at10/111+3038282..3041148DNAJ protein, putative, expressed
LOC_Os01g06460Os.1460.1.S1_at11/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_x_at10/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_at1/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06470Os.174.1.S1_at11/111+3044234..3049067Importin alpha-2 subunit, putative, expressed
LOC_Os01g06480Os.56084.1.S1_at10/111+3048743..3049953Tha8, putative, expressed
LOC_Os01g06480Os.56084.1.S1_x_at10/111+3048743..3049953Tha8, putative, expressed
LOC_Os01g06490Os.24975.1.S1_a_at11/111+3051267..3054000Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g06500Os.32936.1.S1_at11/111+3055366..3056519lectin, putative, expressed
LOC_Os01g06510Os.46028.1.S1_at11/111+3057796..3063837arginyl-tRNA synthetase family protein, expressed
LOC_Os01g06520Os.34779.1.S1_at11/111+3064752..3068039Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1460.3.S1_at--970--5051NONE
GCAGCGACGTCGAAGGTAGCTTTGA
NONE
Os.1460.3.S1_at--668--3351NONE
CAGCGACGTCGAAGGTAGCTTTGAG
NONE
Os.1460.3.S1_at--629--1631NONE
AGCGACGTCGAAGGTAGCTTTGAGG
NONE
Os.1460.3.S1_at--273--4611NONE
GCGACGTCGAAGGTAGCTTTGAGGC
NONE
Os.1460.3.S1_at--290--4071NONE
CGACGTCGAAGGTAGCTTTGAGGCT
NONE
Os.1460.3.S1_at--173--5771NONE
GACGTCGAAGGTAGCTTTGAGGCTT
NONE
Os.1460.3.S1_at--661--1871NONE
ACGTCGAAGGTAGCTTTGAGGCTTT
NONE
Os.1460.3.S1_at--880--3991NONE
CGTCGAAGGTAGCTTTGAGGCTTTC
NONE
Os.1460.3.S1_at--1105--7211NONE
GTCGAAGGTAGCTTTGAGGCTTTCA
NONE
Os.1460.3.S1_at--1077--9351Chr01:3043412..3043431 (20 bp)
TCGAAGGTAGCTTTGAGGCTTTCAC
LOC_Os01g06460
Target Sequence 
GCAGCGACGTCGAAGGTAGCTTTGAGGCTTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1460.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis