Browse Element(s) Details


Os.24975.1.S1_a_at

Description gb:AK071183.1
DB_XREF= gi:32981206
TID=Os.24975.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24975 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative carboxypeptidase D (P0011G08.38), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086P08, full insert sequence.
FL= gb:AK071183.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0649011/11Serine carboxypeptidase II precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06390OsAffx.10553.1.S1_at11/111+3027396..3027965hypothetical protein
LOC_Os01g06400Os.30624.1.S1_at11/111+3028281..3029811expressed protein
LOC_Os01g06400Os.30624.2.S1_x_at8/111+3028281..3029811expressed protein
LOC_Os01g06410OsAffx.23135.1.S1_at11/111+3031030..3031590hypothetical protein
LOC_Os01g06420OsAffx.22993.1.S1_at11/111+3031861..3032493hypothetical protein
LOC_Os01g06430OsAffx.23042.1.S1_at11/111+3033492..3034091hypothetical protein
LOC_Os01g06440Os.31782.1.S1_at11/111+3034491..3035510expressed protein
LOC_Os01g06450OsAffx.10552.1.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed
LOC_Os01g06450OsAffx.10552.2.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed
LOC_Os01g06454Os.1460.2.S1_at10/111+3038282..3041148DNAJ protein, putative, expressed
LOC_Os01g06460Os.1460.1.S1_at11/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_x_at10/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_at1/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06470Os.174.1.S1_at11/111+3044234..3049067Importin alpha-2 subunit, putative, expressed
LOC_Os01g06480Os.56084.1.S1_at10/111+3048743..3049953Tha8, putative, expressed
LOC_Os01g06480Os.56084.1.S1_x_at10/111+3048743..3049953Tha8, putative, expressed
LOC_Os01g06490Os.24975.1.S1_a_at11/111+3051267..3054000Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g06500Os.32936.1.S1_at11/111+3055366..3056519lectin, putative, expressed
LOC_Os01g06510Os.46028.1.S1_at11/111+3057796..3063837arginyl-tRNA synthetase family protein, expressed
LOC_Os01g06520Os.34779.1.S1_at11/111+3064752..3068039Leucine Rich Repeat family protein, expressed
LOC_Os01g06530Os.1433.2.S1_at4/111+3075509..3079138retrotransposon protein, putative, unclassified
LOC_Os01g06530OsAffx.15865.1.S1_at1/111+3075509..3079138retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0004187molecular_functioncarboxypeptidase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24975.1.S1_a_at--1024--2891Chr01:3053141..3053165 (25 bp)
AAGGTCCATGCTTCCTATTTACCGT
LOC_Os01g06490
Os.24975.1.S1_a_at--1115--631Chr01:3053148..3053172 (25 bp)
ATGCTTCCTATTTACCGTGAGCTGA
LOC_Os01g06490
Os.24975.1.S1_a_at--101--10471Chr01:3053159..3053183 (25 bp)
TTACCGTGAGCTGATTGCGGCTGGT
LOC_Os01g06490
Os.24975.1.S1_a_at--346--3831Chr01:3053411..3053435 (25 bp)
CTGCGACAAGATACTCCATTGATGC
LOC_Os01g06490
Os.24975.1.S1_a_at--881--1711Chr01:3053445..3053469 (25 bp)
ACCTACTGTCACTAACTGGTATCCT
LOC_Os01g06490
Os.24975.1.S1_a_at--114--8731Chr01:3053451..3053475 (25 bp)
TGTCACTAACTGGTATCCTTGGTAT
LOC_Os01g06490
Os.24975.1.S1_a_at--211--6631Chr01:3053587..3053611 (25 bp)
GTTGGTGTCAAGTGTATCAAGGTTT
LOC_Os01g06490
Os.24975.1.S1_a_at--1067--491Chr01:3053656..3053680 (25 bp)
ATCGTCCACGGCAAGCCTTAAAACT
LOC_Os01g06490
Os.24975.1.S1_a_at--490--8191Chr01:3053665..3053689 (25 bp)
GGCAAGCCTTAAAACTCTTTGAGCA
LOC_Os01g06490
Os.24975.1.S1_a_at--903--2371Chr01:3053676..3053700 (25 bp)
AAACTCTTTGAGCATTTCCTACAAG
LOC_Os01g06490
Os.24975.1.S1_a_at--706--10671Chr01:3053691..3053715 (25 bp)
TTCCTACAAGATAAGCCCATGCCTC
LOC_Os01g06490
Target Sequence 
AAGGTCCATGCTTCCTATTTACCGTGAGCTGATTGCGGCTGGTNTAAGAATATGGGTTTTCANCGGCGNANCGCTGATTC
TGTAGTCCCCCNTCNCTGCGACAAGATACTCCATTGATGCNCTCTATNTACCTACTGTCACTAACTGGTATCCTTGGTAT
NATGATGAGGAGGTTGCTGGTTGGTGTCAAGTGTATCAAGGTTTGACNCTGGTGACGATCCGAGGAGCNGGGCATGAAGT
TCCTNTCCATCGTCCACGGCAAGCCTTAAAACTCTTTGAGCATTTCCTACAAGATAAGCCCATGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24975.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis