Browse Element(s) Details


Os.1460.3.S1_x_at

Description gb:NM_184448.1
DB_XREF= gi:34895985
GEN=P0011G08.35
TID=Os.1460.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.1460 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0011G08.35 (P0011G08.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0011G08.35 (P0011G08.35), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0646010/11SAT5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06360Os.38172.1.S1_x_at5/111+3013666..3018286transposon protein, putative, unclassified
LOC_Os01g06360Os.43567.1.S1_x_at2/111+3013666..3018286transposon protein, putative, unclassified
LOC_Os01g06370OsAffx.10555.1.S1_at11/111+3022632..3023192hypothetical protein
LOC_Os01g06380OsAffx.22769.1.S1_at11/111+3023615..3024883hypothetical protein
LOC_Os01g06390OsAffx.10553.1.S1_at11/111+3027396..3027965hypothetical protein
LOC_Os01g06400Os.30624.1.S1_at11/111+3028281..3029811expressed protein
LOC_Os01g06400Os.30624.2.S1_x_at8/111+3028281..3029811expressed protein
LOC_Os01g06410OsAffx.23135.1.S1_at11/111+3031030..3031590hypothetical protein
LOC_Os01g06420OsAffx.22993.1.S1_at11/111+3031861..3032493hypothetical protein
LOC_Os01g06430OsAffx.23042.1.S1_at11/111+3033492..3034091hypothetical protein
LOC_Os01g06440Os.31782.1.S1_at11/111+3034491..3035510expressed protein
LOC_Os01g06450OsAffx.10552.1.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed
LOC_Os01g06450OsAffx.10552.2.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed
LOC_Os01g06454Os.1460.2.S1_at10/111+3038282..3041148DNAJ protein, putative, expressed
LOC_Os01g06460Os.1460.1.S1_at11/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_x_at10/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_at1/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06470Os.174.1.S1_at11/111+3044234..3049067Importin alpha-2 subunit, putative, expressed
LOC_Os01g06480Os.56084.1.S1_at10/111+3048743..3049953Tha8, putative, expressed
LOC_Os01g06480Os.56084.1.S1_x_at10/111+3048743..3049953Tha8, putative, expressed
LOC_Os01g06490Os.24975.1.S1_a_at11/111+3051267..3054000Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g06500Os.32936.1.S1_at11/111+3055366..3056519lectin, putative, expressed
LOC_Os01g06510Os.46028.1.S1_at11/111+3057796..3063837arginyl-tRNA synthetase family protein, expressed
LOC_Os01g06520Os.34779.1.S1_at11/111+3064752..3068039Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1460.3.S1_x_at--641--3371Chr01:3041557..3041581 (25 bp)
CAGCCAAGTGCTGCGCCGATGGAGT
LOC_Os01g06460
Os.1460.3.S1_x_at--921--831Chr01:3041575..3041599 (25 bp)
ATGGAGTCCCCGTCGTTATGGGCGA
LOC_Os01g06460
Os.1460.3.S1_x_at--920--5151Chr01:3041665..3041689 (25 bp)
GCAACGACGAGTTCTGCAGCAGCGA
LOC_Os01g06460
Os.1460.3.S1_x_at--969--5051NONE
GCAGCGACGTCGAAGGTAGCTTTGA
NONE
Os.1460.3.S1_x_at--1076--9351Chr01:3043412..3043431 (20 bp)
TCGAAGGTAGCTTTGAGGCTTTCAC
LOC_Os01g06460
Os.1460.3.S1_x_at--409--2731Chr01:3043433..3043457 (25 bp)
AAGCAATGTGGGTGCTGCCATGGCC
LOC_Os01g06460
Os.1460.3.S1_x_at--838--2611Chr01:3043475..3043499 (25 bp)
AACCGTGAGCACCTGGAGGTTGCCT
LOC_Os01g06460
Os.1460.3.S1_x_at--5--3911Chr01:3043487..3043511 (25 bp)
CTGGAGGTTGCCTGCGACCTTGCAA
LOC_Os01g06460
Os.1460.3.S1_x_at--34--1751Chr01:3043503..3043527 (25 bp)
ACCTTGCAACTCACTACTTCTGTCA
LOC_Os01g06460
Os.1460.3.S1_x_at--756--551Chr01:3043578..3043602 (25 bp)
ATCCTGGCTTCAACGGGCGATCTGT
LOC_Os01g06460
Os.1460.3.S1_x_at--793--2571Chr01:3043589..3043613 (25 bp)
AACGGGCGATCTGTCTTGGTCATGA
LOC_Os01g06460
Target Sequence 
CAGCCAAGTGCTGCGCCGATGGAGTCCCCGTCGTTATGGGCGAGCCGCTCGGGGCACCCGCACCGCCGCGGGAGAGCTGG
AACTCGGGGGTGCTCTCCTGCCTCGGCCGCAACGACGAGTTCTGCAGCAGCGACGTCGAAGGTAGCTTTGAGGCTTTCAC
TAAGCAATGTGGGTGCTGCCATGGCCTTGTTGAGGATGAGGGGAACCGTGAGCACCTGGAGGTTGCCTGCGACCTTGCAA
CTCACTACTTCTGTCACCCTTGTGCGCTCTGCCAGGAGGGACGCGAGCTGCGGCGCAGGGTCCCCCATCCTGGCTTCAAC
GGGCGATCTGTCTTGGTCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1460.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis