Browse Element(s) Details


Os.56084.1.S1_x_at

Description gb:AK109233.1
DB_XREF= gi:32994442
TID=Os.56084.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56084 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-F05, full insert sequence.
FL= gb:AK109233.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0648010/11Tha8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06380OsAffx.22769.1.S1_at11/111+3023615..3024883hypothetical protein
LOC_Os01g06390OsAffx.10553.1.S1_at11/111+3027396..3027965hypothetical protein
LOC_Os01g06400Os.30624.1.S1_at11/111+3028281..3029811expressed protein
LOC_Os01g06400Os.30624.2.S1_x_at8/111+3028281..3029811expressed protein
LOC_Os01g06410OsAffx.23135.1.S1_at11/111+3031030..3031590hypothetical protein
LOC_Os01g06420OsAffx.22993.1.S1_at11/111+3031861..3032493hypothetical protein
LOC_Os01g06430OsAffx.23042.1.S1_at11/111+3033492..3034091hypothetical protein
LOC_Os01g06440Os.31782.1.S1_at11/111+3034491..3035510expressed protein
LOC_Os01g06450OsAffx.10552.1.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed
LOC_Os01g06450OsAffx.10552.2.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed
LOC_Os01g06454Os.1460.2.S1_at10/111+3038282..3041148DNAJ protein, putative, expressed
LOC_Os01g06460Os.1460.1.S1_at11/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_x_at10/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_at1/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06470Os.174.1.S1_at11/111+3044234..3049067Importin alpha-2 subunit, putative, expressed
LOC_Os01g06480Os.56084.1.S1_at10/111+3048743..3049953Tha8, putative, expressed
LOC_Os01g06480Os.56084.1.S1_x_at10/111+3048743..3049953Tha8, putative, expressed
LOC_Os01g06490Os.24975.1.S1_a_at11/111+3051267..3054000Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g06500Os.32936.1.S1_at11/111+3055366..3056519lectin, putative, expressed
LOC_Os01g06510Os.46028.1.S1_at11/111+3057796..3063837arginyl-tRNA synthetase family protein, expressed
LOC_Os01g06520Os.34779.1.S1_at11/111+3064752..3068039Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56084.1.S1_x_at--673--1911Chr01:3049405..3049429 (25 bp)
ACGTGTACAAGCTGACGCGGCTGGT
LOC_Os01g06480
Os.56084.1.S1_x_at--1133--3911Chr01:3049186..3049210 (25 bp)
CGGCCAGAGACGTGCTCGACGAAAT
LOC_Os01g06480
Os.56084.1.S1_x_at--294--4151Chr01:3049160..3049184 (25 bp)
CGCGCGCGAGAGGAGCAGCACAACT
LOC_Os01g06480
Os.56084.1.S1_x_at--935--6171Chr01:3049151..3049175 (25 bp)
GAGGAGCAGCACAACTGCGGCTTAA
LOC_Os01g06480
Os.56084.1.S1_x_at--696--5111Chr01:3049143..3049167 (25 bp)
GCACAACTGCGGCTTAACTGTAAAT
LOC_Os01g06480
Os.56084.1.S1_x_at--527--4691Chr01:3049135..3049159 (25 bp)
GCGGCTTAACTGTAAATCTGATTAT
LOC_Os01g06480
Os.56084.1.S1_x_at--141--471Chr01:3049120..3049144 (25 bp)
ATCTGATTATCGTTTTAGAAACCTG
LOC_Os01g06480
Os.56084.1.S1_x_at--956--5532Chr10:16345633..16345652 (20 bp)
GAAACCTGAGGATTATTAAAGTCGT
NONE
Os.56084.1.S1_x_at--884--131Chr01:3049089..3049113 (25 bp)
ATTAAAGTCGTAGCTGCTTCTCTTC
LOC_Os01g06480
Os.56084.1.S1_x_at--524--7211Chr01:3049083..3049107 (25 bp)
GTCGTAGCTGCTTCTCTTCTTTTTT
LOC_Os01g06480
Os.56084.1.S1_x_at--956--9011NONE
TGCAAAGAGAGTAAAGTGTTCTGCT
NONE
Target Sequence 
ACGTGTACAAGCTGACGCGGCTGGTGCGCGCGCTGGTGGCGAAGGGGAGGGCGCGCGCGGCGTGGAGGGTGTACGAGGCG
GCGGTGAGGATGGGAGGCTGCGAGGTGGACGAGTACATGTACAGGGTGATGGCGAGGGGGATGAAGCGGCTGGGCTTCGA
GGCGGAGGCGGCGGAGGTGGAGGCGGACCTCCGGGAGTGGGAGGCCAGGATCTCGCCGCCGGCCAGAGACGTGCTCGACG
AAATGCGCGCGCGAGAGGAGCAGCACAACTGCGGCTTAACTGTAAATCTGATTATCGTTTTAGAAACCTGAGGATTATTA
AAGTCGTAGCTGCTTCTCTTCTTTTTTTTTTACTGCAATTTTTGCAAAGAGAGTAAAGTGTTCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56084.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis