Browse Element(s) Details


OsAffx.15865.1.S1_at

Description tigr:9634.m03920
TID=OsAffx.15865.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4080011/11hypothetical protein
LOC_Os01g065301/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40790OsAffx.28028.1.S1_x_at10/116+24331456..24337115Mlo family protein
LOC_Os06g40790OsAffx.28028.1.S1_at10/116+24331456..24337115Mlo family protein
LOC_Os06g40800OsAffx.15865.1.S1_at11/116+24340756..24341322hypothetical protein
LOC_Os06g40809Os.51592.1.S1_at11/116+24342914..24343459expressed protein
LOC_Os06g40818OsAffx.5071.1.S1_s_at11/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40818Os.51403.1.S1_at11/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40818Os.6790.1.S1_at10/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40818OsAffx.988.1.S1_at1/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40830Os.37083.2.S1_at1/116+24356542..24356868retrotransposon protein, putative, unclassified
LOC_Os06g40840Os.47954.1.S1_at11/116+24358245..24362678microtubule associated protein family protein, putative, expressed
LOC_Os06g40850Os.56087.1.S1_at11/116+24363004..24365498IQ calmodulin-binding motif family protein, expressed
LOC_Os06g40850OsAffx.15866.1.S1_x_at11/116+24363004..24365498IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15865.1.S1_at--85--9011Chr06:24341096..24341140 (25 bp)
TGAAGTGTTCATGGGAGCAGCAAGA
LOC_Os06g40800
OsAffx.15865.1.S1_at--943--5931Chr06:24341082..24341106 (25 bp)
GAGCAGCAAGATCCGTTTTCTACCA
LOC_Os06g40800
OsAffx.15865.1.S1_at--467--5171Chr06:24341077..24341101 (25 bp)
GCAAGATCCGTTTTCTACCAATCGA
LOC_Os06g40800
OsAffx.15865.1.S1_at--792--6371Chr06:24341073..24341097 (25 bp)
GATCCGTTTTCTACCAATCGATTTG
LOC_Os06g40800
OsAffx.15865.1.S1_at--745--3191Chr06:24341059..24341083 (25 bp)
CAATCGATTTGGAAAGCGTGGGTGC
LOC_Os06g40800
OsAffx.15865.1.S1_at--424--7712Chr01:3078668..3078687 (20 bp)
GGGTGCCGCCGAAATGCAAATTCTT
LOC_Os01g06530
OsAffx.15865.1.S1_at--615--7611Chr06:24340969..24340993 (25 bp)
GGGAATTGAGGCTAGCGAAATCAAA
LOC_Os06g40800
OsAffx.15865.1.S1_at--432--10831Chr06:24340868..24340892 (25 bp)
TTGGGCAGAAATCCAAAGATGGACA
LOC_Os06g40800
OsAffx.15865.1.S1_at--601--2791Chr06:24340853..24340877 (25 bp)
AAGATGGACACATACTGACCTCCAA
LOC_Os06g40800
OsAffx.15865.1.S1_at--293--8151Chr06:24340848..24340872 (25 bp)
GGACACATACTGACCTCCAAATGGA
LOC_Os06g40800
OsAffx.15865.1.S1_at--1067--8171Chr06:24340788..24340812 (25 bp)
GGAACCTTGTCGTCGAATCCCCCAG
LOC_Os06g40800
Target Sequence 
TGAAGTGTTCATGGGAGCAGCAAGATCCGTTTTCTACCAATCGATTTGGAAAGCGTGGGTGCCGCCGAAATGCAAATTCT
TCTCTTGGCTTGCTACCCAGAATAGGCTATGGACGGCTGACAGATTGGGGAATTGAGGCTAGCGAAATCAAAAGGTTTGC
CCCCTCTGCCGCACAATCGACGAATCAGCGGTTCACCTTCTGGCCAAATGTAGAGTCACTAAGAGGATTTGGGCAGAAAT
CCAAAGATGGACACATACTGACCTCCAAATGGACAAATGGAATGACTGCCCCTCGATTGAACATTGGTGGAACCTTGTCG
TCGAATCCCCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15865.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis