Browse Element(s) Details


OsAffx.28028.1.S1_x_at

Description tigr:9634.m03919
TID=OsAffx.28028.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to seven transmembrane protein Mlo7
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4079010/11Mlo family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40780Os.51358.1.S1_at11/116+24310311..24315385Protein MONOCULM 1, putative, expressed
LOC_Os06g40790OsAffx.28028.1.S1_x_at10/116+24331456..24337115Mlo family protein
LOC_Os06g40790OsAffx.28028.1.S1_at10/116+24331456..24337115Mlo family protein
LOC_Os06g40800OsAffx.15865.1.S1_at11/116+24340756..24341322hypothetical protein
LOC_Os06g40809Os.51592.1.S1_at11/116+24342914..24343459expressed protein
LOC_Os06g40818OsAffx.5071.1.S1_s_at11/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40818Os.51403.1.S1_at11/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40818Os.6790.1.S1_at10/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40818OsAffx.988.1.S1_at1/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40830Os.37083.2.S1_at1/116+24356542..24356868retrotransposon protein, putative, unclassified
LOC_Os06g40840Os.47954.1.S1_at11/116+24358245..24362678microtubule associated protein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0008219biological_processcell death
GO:0005886cellular_componentplasma membrane
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28028.1.S1_x_at--421--7131Chr06:24333523..24333547 (25 bp)
GTCATCCATCCTTCAATTTCTACAA
LOC_Os06g40790
OsAffx.28028.1.S1_x_at--971--1171Chr06:24333499..24333523 (25 bp)
AGTACTTGATTCGTGCTCTTGAACA
LOC_Os06g40790
OsAffx.28028.1.S1_x_at--659--10031Chr06:24333383..24333484 (25 bp)
TAGTTGGTATCAGCTGGTACATGTG
LOC_Os06g40790
OsAffx.28028.1.S1_x_at--7--7031Chr06:24333367..24333391 (25 bp)
GTACATGTGGCTTTTTGTCATCCTT
LOC_Os06g40790
OsAffx.28028.1.S1_x_at--58--1111Chr06:24333107..24333131 (25 bp)
AGTGGTATCAGTTCTCTTATGGAGC
LOC_Os06g40790
OsAffx.28028.1.S1_x_at--698--332Chr02:29771722..29771902 (25 bp)
ATACTTCTGGTTAGCTTTCTTGCCT
NONE
OsAffx.28028.1.S1_x_at--102--9591NONE
TCTTGCCTCTGTTTCATTTAATGAT
NONE
OsAffx.28028.1.S1_x_at--593--8831Chr06:24332506..24332530 (25 bp)
TGATTATGACTTCGCAGAATCGCAG
LOC_Os06g40790
OsAffx.28028.1.S1_x_at--263--5251Chr06:24332233..24332496 (25 bp)
GAATCACTCGACAGTGTGCTCATCC
LOC_Os06g40790
OsAffx.28028.1.S1_x_at--438--2291Chr06:24332208..24332232 (25 bp)
AAATGATCTGCAGCTACGTCACTCT
LOC_Os06g40790
OsAffx.28028.1.S1_x_at--163--5311Chr06:24331627..24331651 (25 bp)
GAAGGAGGAGCAGCAGTCGTCCCAC
LOC_Os06g40790
Target Sequence 
GTCATCCATCCTTCAATTTCTACAAGTACTTGATTCGTGCTCTTGAACATGACTTTAAGAGAGTAGTTGGTATCAGCTGG
TACATGTGGCTTTTTGTCATCCTTTTCCTATTGCTGAATATAAACGGATTCAGAAAGTGGTATCAGTTCTCTTATGGAGC
AAGGATGGCATACATACTTCTGGTTAGCTTTCTTGCCTCTGTTTCATTTAATGATTATGACTTCGCAGAATCGCAGCTAA
TAAAGGAATCACTCGACAGTGTGCTCATCCAAATGATCTGCAGCTACGTCACTCTACCACTATACGCCATCGTTACACAT
ATGGACGGAGGCATCAAGCTGCAAGGGATTGGGTCGGGCCTGCACGAGTCCGTCGCGGGGTGGGCCCTGGACGCCCGGAG
GAAGAAGGAGGAGCAGCAGTCGTCCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28028.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis