Browse Element(s) Details


Os.12454.1.S1_a_at

Description gb:AK066765.1
DB_XREF= gi:32976783
TID=Os.12454.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12454 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Arabidopsis thaliana chromosome V P1 MJJ3; MJJ3.6 (AB005237) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013082G02, full insert sequence.
FL= gb:AK059497.1 gb:AK066765.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0655011/11zinc finger family protein, putative, expressed
LOC_Os12g240401/11Glycosyl hydrolase family 9 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06510Os.46028.1.S1_at11/111+3057796..3063837arginyl-tRNA synthetase family protein, expressed
LOC_Os01g06520Os.34779.1.S1_at11/111+3064752..3068039Leucine Rich Repeat family protein, expressed
LOC_Os01g06530Os.1433.2.S1_at4/111+3075509..3079138retrotransposon protein, putative, unclassified
LOC_Os01g06530OsAffx.15865.1.S1_at1/111+3075509..3079138retrotransposon protein, putative, unclassified
LOC_Os01g06540OsAffx.10938.1.S1_at11/111+3080197..3081370PHD finger protein, putative
LOC_Os01g06550Os.12454.1.S1_a_at11/111+3082254..3087689zinc finger family protein, putative, expressed
LOC_Os01g06560Os.4770.1.S1_a_at11/111+3088161..3089652tumor-related protein, putative, expressed
LOC_Os01g06570OsAffx.23136.1.S1_at4/111+3092012..3092732hypothetical protein
LOC_Os01g06570Os.57403.1.S1_at1/111+3092012..3092732hypothetical protein
LOC_Os01g06580Os.1437.1.S1_at11/111+3094160..3095324Fasciclin domain containing protein, expressed
LOC_Os01g06590Os.1438.1.S1_at11/111+3096448..3102029Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g06600Os.1440.1.S1_at11/111+3104919..3110765Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os01g06600Os.1440.2.S1_x_at11/111+3104919..3110765Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12454.1.S1_a_at--1118--3471Chr01:3082898..3082922 (25 bp)
CAGGAAGAGGCGTAACCGTGGCCAA
LOC_Os01g06550
Os.12454.1.S1_a_at--1064--7051Chr01:3082887..3082911 (25 bp)
GTAACCGTGGCCAAGAAAGTGTTGA
LOC_Os01g06550
Os.12454.1.S1_a_at--461--2671Chr01:3082871..3082895 (25 bp)
AAGTGTTGAAAGCTCAAAATTCCAG
LOC_Os01g06550
Os.12454.1.S1_a_at--805--2671Chr01:3082759..3082783 (25 bp)
AAGCTGTTGCGTTGAAATTTCTCCT
LOC_Os01g06550
Os.12454.1.S1_a_at--769--192Chr08:24455720..24455739 (20 bp)
ATTTCTCCTGGTTATTTTTCTGTGC
NONE
Os.12454.1.S1_a_at--31--9511Chr01:3082740..3082764 (25 bp)
TCTCCTGGTTATTTTTCTGTGCATA
LOC_Os01g06550
Os.12454.1.S1_a_at--377--10611Chr01:3082726..3082750 (25 bp)
TTCTGTGCATAATCGTTGTAGCTGG
LOC_Os01g06550
Os.12454.1.S1_a_at--872--6631Chr01:3082712..3082736 (25 bp)
GTTGTAGCTGGATTGTACCTTTTGT
LOC_Os01g06550
Os.12454.1.S1_a_at--869--7731Chr01:3082682..3082706 (25 bp)
GGTGTTTACCGGCTTTCTGATTGGA
LOC_Os01g06550
Os.12454.1.S1_a_at--380--1772Chr12:13661853..13662346 (25 bp)
ACCGGCTTTCTGATTGGATGAATGA
LOC_Os12g24040
Os.12454.1.S1_a_at--374--931Chr01:3082631..3082655 (25 bp)
AGGCAGAGGCATTTGAAGCCTGGAA
LOC_Os01g06550
Target Sequence 
CAGGAAGAGGCGTAACCGTGGCCAAGAAAGTGTTGAAAGCTCAAAATTCCAGGAAATCAAAGCTGTTGCGTTGAAATTTC
TCCTGGTTATTTTTCTGTGCATAATCGTTGTAGCTGGATTGTACCTTTTGTGGAAAGGTGTTTACCGGCTTTCTGATTGG
ATGAATGACATGGAGGAGCAGAGGGCCAGGCAGAGGCATTTGAAGCCTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12454.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis