Browse Element(s) Details


Os.1438.1.S1_at

Description gb:AK073728.1
DB_XREF= gi:32983751
TID=Os.1438.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.1438 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU075348(C11252),C98151(C0804),C98150(C0804), C25947(C11252) correspond to a region of the predicted gene.~Similar to Lotus japonicus gene encoding RING finger protein (Y09539) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033058G15, full insert sequence.
FL= gb:AK073728.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0659011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06530Os.1433.2.S1_at4/111+3075509..3079138retrotransposon protein, putative, unclassified
LOC_Os01g06530OsAffx.15865.1.S1_at1/111+3075509..3079138retrotransposon protein, putative, unclassified
LOC_Os01g06540OsAffx.10938.1.S1_at11/111+3080197..3081370PHD finger protein, putative
LOC_Os01g06550Os.12454.1.S1_a_at11/111+3082254..3087689zinc finger family protein, putative, expressed
LOC_Os01g06560Os.4770.1.S1_a_at11/111+3088161..3089652tumor-related protein, putative, expressed
LOC_Os01g06570OsAffx.23136.1.S1_at4/111+3092012..3092732hypothetical protein
LOC_Os01g06570Os.57403.1.S1_at1/111+3092012..3092732hypothetical protein
LOC_Os01g06580Os.1437.1.S1_at11/111+3094160..3095324Fasciclin domain containing protein, expressed
LOC_Os01g06590Os.1438.1.S1_at11/111+3096448..3102029Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g06600Os.1440.1.S1_at11/111+3104919..3110765Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os01g06600Os.1440.2.S1_x_at11/111+3104919..3110765Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os01g06610NANA1+3112964..3113704retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06620Os.9437.1.S1_at11/111+3119707..3120853expressed protein
LOC_Os01g06630NANA1+3121609..3122002Small hydrophilic plant seed protein
LOC_Os01g06640Os.1443.1.S1_a_at11/111+3125794..3127451Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1438.1.S1_at--627--2451Chr01:3097851..3097875 (25 bp)
AACAATTTGCTCTCCGCGAATCAAG
LOC_Os01g06590
Os.1438.1.S1_at--776--4171Chr01:3097812..3097836 (25 bp)
CCCACAGGGCCATGAGACTGGACAT
LOC_Os01g06590
Os.1438.1.S1_at--874--8091Chr01:3097683..3097707 (25 bp)
GGACCTGCTGGCTTTGGGAGAATCT
LOC_Os01g06590
Os.1438.1.S1_at--612--9771Chr01:3097653..3097677 (25 bp)
TAATGTCTGCACAGGCTTGGTGGAC
LOC_Os01g06590
Os.1438.1.S1_at--385--8971Chr01:3097378..3097402 (25 bp)
TGAAATGCAATCACGACTTCCACAC
LOC_Os01g06590
Os.1438.1.S1_at--452--8051Chr01:3097329..3097353 (25 bp)
GGAGAAGAACTCATGCCCAATTTGC
LOC_Os01g06590
Os.1438.1.S1_at--552--2851Chr01:3097304..3097328 (25 bp)
AAGTCGGCTGCTGCATAGGACACGC
LOC_Os01g06590
Os.1438.1.S1_at--773--10091Chr01:3097289..3097313 (25 bp)
TAGGACACGCGAGGACAAACAACAA
LOC_Os01g06590
Os.1438.1.S1_at--917--2811Chr01:3097228..3097252 (25 bp)
AAGTTGTTTCATTCTTTGTGCGCCT
LOC_Os01g06590
Os.1438.1.S1_at--873--7291Chr01:3097211..3097235 (25 bp)
GTGCGCCTCAGCCATGTAAATAAGT
LOC_Os01g06590
Os.1438.1.S1_at--863--7471Chr01:3097161..3097185 (25 bp)
GTGTGTTACCATAGCTGATATCCTT
LOC_Os01g06590
Target Sequence 
AACAATTTGCTCTCCGCGAATCAAGAGAAGCACAAGACCCCCACAGGGCCATGAGACTGGACATTGACAATATGAGTTAT
GAGGACCTGCTGGCTTTGGGAGAATCTATTGGTAATGTCTGCACAGGCTTGGTGGACGAGAAAATCTCAGGTTGTGTGAG
AGAAGTGATCTATTGCAGTTCTGATGAACAGCAAAATGATCAAGATGATGGGAAATGTGCAATTTGTCTGGAGGAATACA
AAGACAACAGTTTGCTGGGAATACTGAAATGCAATCACGACTTCCACACCGACTGCGTCAAGAAGTGGTTGAAGGAGAAG
AACTCATGCCCAATTTGCAAGTCGGCTGCTGCATAGGACACGCGAGGACAAACAACAATATGGTCCTCAAATTTGTTAGT
ATTTAGACCCAATTAAGTTGTTTCATTCTTTGTGCGCCTCAGCCATGTAAATAAGTAAGTTTGCTAACATTAAATTATTT
TGTGTGTTACCATAGCTGATATCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1438.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis