Browse Element(s) Details


Os.1440.1.S1_at

Description gb:CB656566
DB_XREF= gi:29660291
DB_XREF=OSJNEc11B05.r
CLONE=OSJNEc11B05
TID=Os.1440.1
CNT=43
FEA=FLmRNA
TIER=Stack
STK=15
UG=Os.1440 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU056822(S20908),C26441(C12328), C28477(C61243) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana putative acyl-coA dehydrogenase (AF049236) (Gene), mRNA
FL= gb:AK100550.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0660011/11Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06540OsAffx.10938.1.S1_at11/111+3080197..3081370PHD finger protein, putative
LOC_Os01g06550Os.12454.1.S1_a_at11/111+3082254..3087689zinc finger family protein, putative, expressed
LOC_Os01g06560Os.4770.1.S1_a_at11/111+3088161..3089652tumor-related protein, putative, expressed
LOC_Os01g06570OsAffx.23136.1.S1_at4/111+3092012..3092732hypothetical protein
LOC_Os01g06570Os.57403.1.S1_at1/111+3092012..3092732hypothetical protein
LOC_Os01g06580Os.1437.1.S1_at11/111+3094160..3095324Fasciclin domain containing protein, expressed
LOC_Os01g06590Os.1438.1.S1_at11/111+3096448..3102029Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g06600Os.1440.1.S1_at11/111+3104919..3110765Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os01g06600Os.1440.2.S1_x_at11/111+3104919..3110765Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os01g06610NANA1+3112964..3113704retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06620Os.9437.1.S1_at11/111+3119707..3120853expressed protein
LOC_Os01g06630NANA1+3121609..3122002Small hydrophilic plant seed protein
LOC_Os01g06640Os.1443.1.S1_a_at11/111+3125794..3127451Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g06650OsAffx.21870.3.S1_x_at1/111+3131019..3132211hypothetical protein
LOC_Os01g06650OsAffx.21870.2.S1_x_at1/111+3131019..3132211hypothetical protein
LOC_Os01g06660Os.1445.1.S1_at11/111+3132906..3137019Pyruvate decarboxylase isozyme 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006552biological_processleucine catabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0046459biological_processshort-chain fatty acid metabolism
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0005777cellular_componentperoxisome
GO:0003997molecular_functionacyl-CoA oxidase activity
GO:0008470molecular_functionisovaleryl-CoA dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1440.1.S1_at--1025--7871Chr01:3105453..3105477 (25 bp)
GGTTATAACCATCATTTTCCGAAGA
LOC_Os01g06600
Os.1440.1.S1_at--822--9851Chr01:3105419..3105443 (25 bp)
TACAGCTCACTGCAATTTCTTCTCA
LOC_Os01g06600
Os.1440.1.S1_at--116--9831Chr01:3105372..3105396 (25 bp)
TAAAAATCAGGTCCCCATGCACCGA
LOC_Os01g06600
Os.1440.1.S1_at--421--5091Chr01:3105354..3105378 (25 bp)
GCACCGATTATTGGCCGGCTAATGC
LOC_Os01g06600
Os.1440.1.S1_at--822--1991Chr01:3105308..3105332 (25 bp)
ACTCCTTGGAAAATTCTCTGGTCAA
LOC_Os01g06600
Os.1440.1.S1_at--988--3771Chr01:3105293..3105317 (25 bp)
CTCTGGTCAATCTTGGCTGGCTAGA
LOC_Os01g06600
Os.1440.1.S1_at--518--4731Chr01:3105266..3105290 (25 bp)
GCTGTGCCGTGCGAGAGGATATCTA
LOC_Os01g06600
Os.1440.1.S1_at--1057--211Chr01:3105248..3105272 (25 bp)
ATATCTAACGTATCCGAATCACCTC
LOC_Os01g06600
Os.1440.1.S1_at--816--3071Chr01:3105232..3105256 (25 bp)
AATCACCTCGTTGGAATCGTGTCCG
LOC_Os01g06600
Os.1440.1.S1_at--380--9831Chr01:3105187..3105211 (25 bp)
TAAAAGCTCCGTCCTGTATGCCAAG
LOC_Os01g06600
Os.1440.1.S1_at--512--4371Chr01:3105168..3105192 (25 bp)
GCCAAGTCTTGGCATTTAACTGTTG
LOC_Os01g06600
Target Sequence 
GGTTATAACCATCATTTTCCGAAGAGGATAAAGCTACAGCTCACTGCAATTTCTTCTCAGATTGCTACTACAGGAAGCAA
ATAAAAATCAGGTCCCCATGCACCGATTATTGGCCGGCTAATGCAGCATGATGCAGACCAAATAGACTCCTTGGAAAATT
CTCTGGTCAATCTTGGCTGGCTAGAAGGCTGTGCCGTGCGAGAGGATATCTAACGTATCCGAATCACCTCGTTGGAATCG
TGTCCGGTGGTGGAGGACAGCATGAATAAAAGCTCCGTCCTGTATGCCAAGTCTTGGCATTTAACTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1440.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis