Browse Element(s) Details


Os.4770.1.S1_a_at

Description gb:AK106273.1
DB_XREF= gi:32991482
TID=Os.4770.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4770 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU057825(S21823),AU057072(S21123) correspond to a region of the predicted gene.~Similar to Nicotiana glauca X Nicotiana langsdorffii mRNA for tumor-related protein (D26453) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-G11, full insert sequence.
FL= gb:AK106273.1 gb:AK070330.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0656011/11tumor-related protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06510Os.46028.1.S1_at11/111+3057796..3063837arginyl-tRNA synthetase family protein, expressed
LOC_Os01g06520Os.34779.1.S1_at11/111+3064752..3068039Leucine Rich Repeat family protein, expressed
LOC_Os01g06530Os.1433.2.S1_at4/111+3075509..3079138retrotransposon protein, putative, unclassified
LOC_Os01g06530OsAffx.15865.1.S1_at1/111+3075509..3079138retrotransposon protein, putative, unclassified
LOC_Os01g06540OsAffx.10938.1.S1_at11/111+3080197..3081370PHD finger protein, putative
LOC_Os01g06550Os.12454.1.S1_a_at11/111+3082254..3087689zinc finger family protein, putative, expressed
LOC_Os01g06560Os.4770.1.S1_a_at11/111+3088161..3089652tumor-related protein, putative, expressed
LOC_Os01g06570OsAffx.23136.1.S1_at4/111+3092012..3092732hypothetical protein
LOC_Os01g06570Os.57403.1.S1_at1/111+3092012..3092732hypothetical protein
LOC_Os01g06580Os.1437.1.S1_at11/111+3094160..3095324Fasciclin domain containing protein, expressed
LOC_Os01g06590Os.1438.1.S1_at11/111+3096448..3102029Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g06600Os.1440.1.S1_at11/111+3104919..3110765Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os01g06600Os.1440.2.S1_x_at11/111+3104919..3110765Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os01g06610NANA1+3112964..3113704retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4770.1.S1_a_at--1035--6291Chr01:3088705..3088729 (25 bp)
GATGAGGCGCGTGCTGGAGATGGCA
LOC_Os01g06560
Os.4770.1.S1_a_at--947--5751Chr01:3088680..3088704 (25 bp)
GACGGGCTGAGGCTGGAGACGATGA
LOC_Os01g06560
Os.4770.1.S1_a_at--619--5091Chr01:3088579..3088603 (25 bp)
GCACGAGTTCGGCAGGCGCAAGGAC
LOC_Os01g06560
Os.4770.1.S1_a_at--253--9431Chr01:3088510..3088534 (25 bp)
TCGTGTCGTGTCGTTGCCGTTCCAA
LOC_Os01g06560
Os.4770.1.S1_a_at--741--8711Chr01:3088502..3088526 (25 bp)
TGTCGTTGCCGTTCCAAGTGCGCGG
LOC_Os01g06560
Os.4770.1.S1_a_at--70--7511Chr01:3088476..3088500 (25 bp)
GTGGTCTCCGATGCGTAGGCTCGTC
LOC_Os01g06560
Os.4770.1.S1_a_at--307--6351Chr01:3088467..3088491 (25 bp)
GATGCGTAGGCTCGTCGTCTAGCTC
LOC_Os01g06560
Os.4770.1.S1_a_at--1049--911Chr01:3088460..3088484 (25 bp)
AGGCTCGTCGTCTAGCTCTGGTCAA
LOC_Os01g06560
Os.4770.1.S1_a_at--308--7211Chr01:3088454..3088478 (25 bp)
GTCGTCTAGCTCTGGTCAACTCAAG
LOC_Os01g06560
Os.4770.1.S1_a_at--757--8591Chr01:3088442..3088466 (25 bp)
TGGTCAACTCAAGTCGTCGCGATAA
LOC_Os01g06560
Os.4770.1.S1_a_at--888--9711Chr01:3088434..3088458 (25 bp)
TCAAGTCGTCGCGATAAGCTTTGAC
LOC_Os01g06560
Target Sequence 
GATGAGGCGCGTGCTGGAGATGGCAGACGGGCTGAGGCTGGAGACGATGAGGGAGGTGGTGGCGCTGCTCCGCCCGTCGC
AGGCCGTGCACTTCCTCATCGCCGCCGCCGAGCTCCACCTCGCCGTGCACGAGTTCGGCAGGCGCAAGGACGGCGACGGC
GCCGCGTCGCCGCCGCCGGCGTGACGCGTGCGCGCTCGTGTCGTGTCGTTGCCGTTCCAAGTGCGCGGCGTGGTCTCCGA
TGCGTAGGCTCGTCGTCTAGCTCTGGTCAACTCAAGTCGTCGCGATAAGCTTTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4770.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis