Browse Element(s) Details


OsAffx.15781.1.S1_at

Description tigr:9634.m03471
TID=OsAffx.15781.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3653011/11hAT family dimerisation domain containing protein
LOC_Os01g066802/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36500Os.46785.2.S1_x_at4/116+21435108..21441190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g36500OsAffx.30226.2.S1_x_at1/116+21435108..21441190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g36500OsAffx.442.1.S1_x_at1/116+21435108..21441190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g36510OsAffx.15780.1.S1_at11/116+21442597..21444965hypothetical protein
LOC_Os06g36510Os.37971.1.A1_at1/116+21442597..21444965hypothetical protein
LOC_Os06g36510OsAffx.31757.1.A1_at1/116+21442597..21444965hypothetical protein
LOC_Os06g36520Os.51667.1.S1_at11/116+21446777..21449996GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g36530OsAffx.15781.1.S1_at11/116+21460009..21462647hAT family dimerisation domain containing protein
LOC_Os06g36530OsAffx.15781.5.S1_x_at1/116+21460009..21462647hAT family dimerisation domain containing protein
LOC_Os06g36540NANA6+21467041..21471254retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g36550Os.45173.1.S1_x_at1/116+21471521..21473456retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g36560Os.6345.1.S1_at11/116+21477477..21481449Inositol oxygenase, putative, expressed
LOC_Os06g36570NANA6+21482765..21483520Serine carboxypeptidase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15781.1.S1_at--883--111Chr06:21460557..21460581 (25 bp)
ATTAATTACCATCGGTTTCATGCTG
LOC_Os06g36530
OsAffx.15781.1.S1_at--203--2151Chr06:21460467..21460491 (25 bp)
ACAGAACTCCTTAGATGTATGGCAT
LOC_Os06g36530
OsAffx.15781.1.S1_at--774--8751Chr06:21460452..21460476 (25 bp)
TGTATGGCATCATTCAATCCATCCA
LOC_Os06g36530
OsAffx.15781.1.S1_at--749--571Chr06:21460436..21460460 (25 bp)
ATCCATCCAAAGGATTTTCAGCTTT
LOC_Os06g36530
OsAffx.15781.1.S1_at--635--2711Chr06:21460392..21460416 (25 bp)
AAGCTTGCTGAGTTTTATCCTCATG
LOC_Os06g36530
OsAffx.15781.1.S1_at--1052--6511Chr06:21460362..21460386 (25 bp)
GATTTCGAAGAAATGAACCAGCTTT
LOC_Os06g36530
OsAffx.15781.1.S1_at--1106--651Chr06:21460350..21460374 (25 bp)
ATGAACCAGCTTTCTTTTCAACTCA
LOC_Os06g36530
OsAffx.15781.1.S1_at--943--2891Chr06:21460277..21460301 (25 bp)
AAGGTCTAGCAGAACTATCCATGAT
LOC_Os06g36530
OsAffx.15781.1.S1_at--395--2493Chr01:22807887..22807906 (20 bp)
AACAGAGAGGGTTCGTCGGTATGAA
NONE
OsAffx.15781.1.S1_at--745--6913Chr01:22807900..22807924 (25 bp)
GTATGAACTTGTTTATAGACTTCTC
NONE
OsAffx.15781.1.S1_at--221--2873Chr08:3315706..3315727 (22 bp)
AAGGGAATTCTTTTTGCAAGCTAAG
NONE
Target Sequence 
ATTAATTACCATCGGTTTCATGCTGATATGTTTTTGGGTGTCATTGATAGACAACTTCAAGAGTTGAATAACAGGTTTGA
TGAGGTAAACACAGAACTCCTTAGATGTATGGCATCATTCAATCCATCCAAAGGATTTTCAGCTTTTAATGTTGAGAGCT
TAGTTAAGCTTGCTGAGTTTTATCCTCATGATTTTGATTTCGAAGAAATGAACCAGCTTTCTTTTCAACTCAACCGCTAT
ATTAGTGATGTGACCAAAGATGAGAAATTCACTAATTTGAAAGGTCTAGCAGAACTATCCATGATGCTTGTCAAAACAGA
GAGGGTTCGTCGGTATGAACTTGTTTATAGACTTCTCAAATTGGTTCTAGTTCTCCCTGTTGCAACTGCTGGTGTTGAGA
GGGTCTTTTCTTCAATGAACTACATCAAAAACAAGTTGAGAACCAAGATGGGACAGAAATACTTGAATGATTGTTTGGTT
ACATTCATTGAAAGGGAATTCTTTTTGCAAGCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15781.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis