Browse Element(s) Details


Os.51667.1.S1_at

Description gb:AK063332.1
DB_XREF= gi:32973350
TID=Os.51667.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51667 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-A03, full insert sequence.
FL= gb:AK063332.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3652011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36490Os.16567.1.S1_at10/116+21430284..21434705UPF0326 protein hag1, putative, expressed
LOC_Os06g36500Os.46785.2.S1_x_at4/116+21435108..21441190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g36500OsAffx.30226.2.S1_x_at1/116+21435108..21441190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g36500OsAffx.442.1.S1_x_at1/116+21435108..21441190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g36510OsAffx.15780.1.S1_at11/116+21442597..21444965hypothetical protein
LOC_Os06g36510Os.37971.1.A1_at1/116+21442597..21444965hypothetical protein
LOC_Os06g36510OsAffx.31757.1.A1_at1/116+21442597..21444965hypothetical protein
LOC_Os06g36520Os.51667.1.S1_at11/116+21446777..21449996GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g36530OsAffx.15781.1.S1_at11/116+21460009..21462647hAT family dimerisation domain containing protein
LOC_Os06g36530OsAffx.15781.5.S1_x_at1/116+21460009..21462647hAT family dimerisation domain containing protein
LOC_Os06g36540NANA6+21467041..21471254retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g36550Os.45173.1.S1_x_at1/116+21471521..21473456retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51667.1.S1_at--318--2651Chr06:21448409..21448868 (25 bp)
AACCACCTGCAGAGATTGTATGATC
LOC_Os06g36520
Os.51667.1.S1_at--19--5351Chr06:21448879..21448903 (25 bp)
GAAGTTTGTGCTATTCTCCATCCAA
LOC_Os06g36520
Os.51667.1.S1_at--1113--6651Chr06:21448911..21448935 (25 bp)
GTTGCACCCCTGTGGTGAGGACCTT
LOC_Os06g36520
Os.51667.1.S1_at--161--2611Chr06:21448940..21448964 (25 bp)
AACGCTACCAGTGATGCTTGCATTG
LOC_Os06g36520
Os.51667.1.S1_at--242--9071Chr06:21448954..21448978 (25 bp)
TGCTTGCATTGAGCCGATGAACCAT
LOC_Os06g36520
Os.51667.1.S1_at--391--2551Chr06:21448994..21449018 (25 bp)
AACTCTGGGCTAAGATCTATCGTTA
LOC_Os06g36520
Os.51667.1.S1_at--810--3631Chr06:21449062..21449086 (25 bp)
CTTCGTCTACGTCAATTCCTACAAG
LOC_Os06g36520
Os.51667.1.S1_at--809--9991Chr06:21449092..21449116 (25 bp)
TAGCGATATAATACAGCACCCGGCA
LOC_Os06g36520
Os.51667.1.S1_at--415--7551Chr06:21449749..21449773 (25 bp)
GGGCCATCTGCAGTGACAGGACCAA
LOC_Os06g36520
Os.51667.1.S1_at--714--5851Chr06:21449768..21449792 (25 bp)
GACCAAGTACGCCTTCTTCGATGGG
LOC_Os06g36520
Os.51667.1.S1_at--892--4131Chr06:21449851..21449875 (25 bp)
CGCCGGACAAAGTCTACCCTATCAA
LOC_Os06g36520
Target Sequence 
AACCACCTGCAGAGATTGTATGATCTAGGGGCAAGGAAGTTTGTGCTATTCTCCATCCAACCCCTGGGTTGCACCCCTGT
GGTGAGGACCTTCCTCAACGCTACCAGTGATGCTTGCATTGAGCCGATGAACCATGCGGCGCTCCTCTTCAACTCTGGGC
TAAGATCTATCGTTAAAAATCACAATGGTGGCGTGAGGTCACACATGCCCGCCGCGAGCTTCGTCTACGTCAATTCCTAC
AAGATCATTAGCGATATAATACAGCACCCGGCAAAATATGGCATCAGGAAAACGAGTCGAGCTTGCTGTGAGGTGTCGAG
GGGAGGCGTGCTGTGTCAGAAGGGGGGGGCCATCTGCAGTGACAGGACCAAGTACGCCTTCTTCGATGGGCTCCACCCGA
CAGACGTGGTGAATGCCAGGCTGGCACGCAAGGCGTACGGCTCCAACTCGCCGGACAAAGTCTACCCTATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51667.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis