Browse Element(s) Details


Os.16567.1.S1_at

Description gb:AK108074.1
DB_XREF= gi:32993283
TID=Os.16567.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16567 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-D09, full insert sequence.
FL= gb:AK108074.1 gb:AK103575.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3649010/11UPF0326 protein hag1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36470Os.35344.18.S1_x_at11/116+21403279..21409326transposon protein, putative, Mutator sub-class
LOC_Os06g36470Os.35344.3.S1_x_at9/116+21403279..21409326transposon protein, putative, Mutator sub-class
LOC_Os06g36470OsAffx.22940.5.S1_x_at3/116+21403279..21409326transposon protein, putative, Mutator sub-class
LOC_Os06g36480OsAffx.15779.1.S1_at11/116+21413177..21420657No apical meristem protein
LOC_Os06g36490Os.16567.1.S1_at10/116+21430284..21434705UPF0326 protein hag1, putative, expressed
LOC_Os06g36500Os.46785.2.S1_x_at4/116+21435108..21441190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g36500OsAffx.30226.2.S1_x_at1/116+21435108..21441190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g36500OsAffx.442.1.S1_x_at1/116+21435108..21441190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g36510OsAffx.15780.1.S1_at11/116+21442597..21444965hypothetical protein
LOC_Os06g36510Os.37971.1.A1_at1/116+21442597..21444965hypothetical protein
LOC_Os06g36510OsAffx.31757.1.A1_at1/116+21442597..21444965hypothetical protein
LOC_Os06g36520Os.51667.1.S1_at11/116+21446777..21449996GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16567.1.S1_at--1108--311Chr06:21432539..21432563 (25 bp)
ATACTTATCACCTCATTTCCAAAAA
LOC_Os06g36490
Os.16567.1.S1_at--850--7051Chr06:21432512..21432536 (25 bp)
GTAACCACTTTACGGATGATCTCAG
LOC_Os06g36490
Os.16567.1.S1_at--135--5391NONE
GAAGCTAGGTGCCTTTTGCAACTGC
NONE
Os.16567.1.S1_at--432--4451Chr06:21430853..21430877 (25 bp)
GCCTTCTGCCAGAAAGCATGCGGTT
LOC_Os06g36490
Os.16567.1.S1_at--123--8651Chr06:21430819..21430843 (25 bp)
TGGGACAAAGCACCTCGCGGACTGT
LOC_Os06g36490
Os.16567.1.S1_at--232--5731Chr06:21430684..21430824 (25 bp)
GACTGTCATTTCTCAGATGATTCCC
LOC_Os06g36490
Os.16567.1.S1_at--493--6431Chr06:21430627..21430651 (25 bp)
GATCTTGAAGACAAGCACCTGCTTT
LOC_Os06g36490
Os.16567.1.S1_at--1061--3831Chr06:21430609..21430633 (25 bp)
CTGCTTTCACAATCTTCTGTTTCTG
LOC_Os06g36490
Os.16567.1.S1_at--1043--7751Chr06:21430557..21430581 (25 bp)
GGTGACAAACTGCTGAGGCTATACA
LOC_Os06g36490
Os.16567.1.S1_at--352--6871Chr06:21430484..21430508 (25 bp)
GTATTCCAAAATTTAGTGCGCTCTT
LOC_Os06g36490
Os.16567.1.S1_at--600--1131Chr06:21430470..21430494 (25 bp)
AGTGCGCTCTTTGTATTCTAAGTTG
LOC_Os06g36490
Target Sequence 
ATACTTATCACCTCATTTCCAAAAACTGTAACCACTTTACGGATGATCTCAGTACCAGATTGACAGGAAAACCGATTCCT
GGCTGGGTTAACCGACNTGCGAAGCTAGGTGCCTTTTGCAACTGCCTTCTGCCAGAAAGCATGCGGTTGGAGTCAACTGG
GACAAAGCACCTCGCGGACTGTCATTTCTCAGATGATTCCCNCACATCCAGCAATGAGCATTTTGAAGATGAAGATCTTG
AAGACAAGCACCTGCTTTCACAATCTTCTGTTTCTGAAGATGCAATTGTAAAGGAAGTTCACAGGTGACAAACTGCTGAG
GCTATACAGAATAATTTGGTGTGTAGTTTGTCATTCATTTTGTACATTGTAATTCTGTATTCCAAAATTTAGTGCGCTCT
TTGTATTCTAAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis