Browse Element(s) Details


OsAffx.15780.1.S1_at

Description tigr:9634.m03469
TID=OsAffx.15780.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3651011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36480OsAffx.15779.1.S1_at11/116+21413177..21420657No apical meristem protein
LOC_Os06g36490Os.16567.1.S1_at10/116+21430284..21434705UPF0326 protein hag1, putative, expressed
LOC_Os06g36500Os.46785.2.S1_x_at4/116+21435108..21441190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g36500OsAffx.30226.2.S1_x_at1/116+21435108..21441190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g36500OsAffx.442.1.S1_x_at1/116+21435108..21441190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g36510OsAffx.15780.1.S1_at11/116+21442597..21444965hypothetical protein
LOC_Os06g36510Os.37971.1.A1_at1/116+21442597..21444965hypothetical protein
LOC_Os06g36510OsAffx.31757.1.A1_at1/116+21442597..21444965hypothetical protein
LOC_Os06g36520Os.51667.1.S1_at11/116+21446777..21449996GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g36530OsAffx.15781.1.S1_at11/116+21460009..21462647hAT family dimerisation domain containing protein
LOC_Os06g36530OsAffx.15781.5.S1_x_at1/116+21460009..21462647hAT family dimerisation domain containing protein
LOC_Os06g36540NANA6+21467041..21471254retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15780.1.S1_at--181--4231Chr06:21444895..21444919 (25 bp)
CCGACGACCGGCGAGATTCAGAGGT
LOC_Os06g36510
OsAffx.15780.1.S1_at--715--6051Chr06:21444883..21444907 (25 bp)
GAGATTCAGAGGTGCGCCATGCGCC
LOC_Os06g36510
OsAffx.15780.1.S1_at--324--9791Chr06:21443169..21443191 (23 bp)
TAAGTTACAAGATCCGCAAGCCCGT
LOC_Os06g36510
OsAffx.15780.1.S1_at--702--5291Chr06:21442711..21443138 (25 bp)
GAAGGCAGCCGATAAGGAAGTGCAA
LOC_Os06g36510
OsAffx.15780.1.S1_at--651--2931Chr06:21442698..21442721 (24 bp)
AAGGAAGTGCAAGGCCTCATCGTTC
LOC_Os06g36510
OsAffx.15780.1.S1_at--338--4451Chr06:21442685..21442709 (25 bp)
GCCTCATCGTTCTCGTCAGGGATAA
LOC_Os06g36510
OsAffx.15780.1.S1_at--671--491Chr06:21442680..21442704 (25 bp)
ATCGTTCTCGTCAGGGATAAGCGCA
LOC_Os06g36510
OsAffx.15780.1.S1_at--781--7951Chr06:21442666..21442690 (25 bp)
GGATAAGCGCACGATCTTGCAGTGT
LOC_Os06g36510
OsAffx.15780.1.S1_at--195--6431Chr06:21442654..21442678 (25 bp)
GATCTTGCAGTGTGCCCATCCAGAT
LOC_Os06g36510
OsAffx.15780.1.S1_at--830--7291Chr06:21442643..21442667 (25 bp)
GTGCCCATCCAGATCGTCTGGCAAA
LOC_Os06g36510
OsAffx.15780.1.S1_at--332--9231Chr06:21442636..21442660 (25 bp)
TCCAGATCGTCTGGCAAAGCTTCTT
LOC_Os06g36510
Target Sequence 
CCGACGACCGGCGAGATTCAGAGGTGCGCCATGCGCCCTGCATCGCGCCGCCGTCGTGCGCCCTGCGCAACGCCGCCGCC
GTGCGTGATGTGGACGGGAGGGAGATGGGGATGGGGGAGACTAGGGAGAGGATAAGTTACAAGATCCGCAAGCCCGTCCA
GACGAAGAGGGGCAAGAAAGGTGGGAAGAAGGCAGCCGATAAGGAAGTGCAAGGCCTCATCGTTCTCGTCAGGGATAAGC
GCACGATCTTGCAGTGTGCCCATCCAGATCGTCTGGCAAAGCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15780.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis