Browse Element(s) Details


Os.6345.1.S1_at

Description gb:AK068862.1
DB_XREF= gi:32978887
TID=Os.6345.1
CNT=46
FEA=FLmRNA
TIER=FL+Stack
STK=15
UG=Os.6345 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-016-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169F14, full insert sequence.
FL= gb:AK103977.1 gb:AK068862.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3656011/11Inositol oxygenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36530OsAffx.15781.1.S1_at11/116+21460009..21462647hAT family dimerisation domain containing protein
LOC_Os06g36530OsAffx.15781.5.S1_x_at1/116+21460009..21462647hAT family dimerisation domain containing protein
LOC_Os06g36540NANA6+21467041..21471254retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g36550Os.45173.1.S1_x_at1/116+21471521..21473456retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g36560Os.6345.1.S1_at11/116+21477477..21481449Inositol oxygenase, putative, expressed
LOC_Os06g36570NANA6+21482765..21483520Serine carboxypeptidase family protein
LOC_Os06g36580NANA6+21488769..21489242retrotransposon protein, putative, unclassified
LOC_Os06g36590Os.18658.1.S1_at11/116+21492258..21500374K+ efflux antiporter, putative, expressed
LOC_Os06g36600NANA6+21506291..21506987hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019853biological_processL-ascorbic acid biosynthesis
GO:0016491molecular_functionoxidoreductase activity
GO:0050113molecular_functioninositol oxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6345.1.S1_at--514--3191Chr06:21480417..21480441 (25 bp)
CAAGGAGAACCCTGACTACCTGAAC
LOC_Os06g36560
Os.6345.1.S1_at--830--1991Chr06:21480470..21480494 (25 bp)
ACTCCGAGGGCTGTGGCCTTGACAA
LOC_Os06g36560
Os.6345.1.S1_at--1008--7551Chr06:21480510..21480534 (25 bp)
GGGCCATGACGACTACATGTACCTG
LOC_Os06g36560
Os.6345.1.S1_at--393--2111Chr06:21480524..21480680 (25 bp)
ACATGTACCTGGTTGCCAAGGAGAA
LOC_Os06g36560
Os.6345.1.S1_at--945--971Chr06:21480674..21480698 (25 bp)
AGGAGAACAAGACCACTCTTCCTTC
LOC_Os06g36560
Os.6345.1.S1_at--485--9051Chr06:21480699..21480723 (25 bp)
TGCAGGCTTGTTCATCATCAGATAT
LOC_Os06g36560
Os.6345.1.S1_at--857--2631Chr06:21480888..21480912 (25 bp)
AACCTCAAATGGCTGCGTGTGTTCA
LOC_Os06g36560
Os.6345.1.S1_at--623--5311Chr06:21481040..21481064 (25 bp)
GAAGGTGAAGCCCTACTACATGTCA
LOC_Os06g36560
Os.6345.1.S1_at--1134--6871Chr06:21481178..21481202 (25 bp)
GTATTTCCCGGCCAAGTTGAGATGG
LOC_Os06g36560
Os.6345.1.S1_at--308--71Chr06:21481262..21481286 (25 bp)
ATTGCAGGAGTTCAGTTGGCTGTAC
LOC_Os06g36560
Os.6345.1.S1_at--928--10771Chr06:21481334..21481358 (25 bp)
TTGTTGGGAGCCATGCACGTGGAAT
LOC_Os06g36560
Target Sequence 
CAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTTGGGGCCTACTCCGAGGGCTGTGGCCTTGACAATG
TTCTCATGTCCTGGGGCCATGACGACTACATGTACCTGGTTGCCAAGGAGAACAAGACCACTCTTCCTTCTGCAGGCTTG
TTCATCATCAGATATCATTCATTCTACCCCCTGCACAAGCATGGAGCCTACATGCATNTGATGAACGATGAGGACAAGGA
GAACCTCAAATGGCTGCGTGTGTTCAACAAATACGACCTGTACAGCAAGAGCAATGAGAGGATAGACGTTGAGAAGGTGA
AGCCCTACTACATGTCACTCATCGAAAAGTATTTCCCGGCCAAGTTGAGATGGTGAAGAAGAGGGAGAGAACATAAAAAA
AATTGGTCGAAATTATCCTGTAATATGATGTAATTGCAGGAGTTCAGTTGGCTGTACAAGTATGTAGTAGTACGTGTACA
CATTTTGTATGTTAAGAGCAGAATTTGTTGGGAGCCATGCACGTGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis