Browse Element(s) Details


Os.18658.1.S1_at

Description gb:AK120422.1
DB_XREF= gi:37990045
TID=Os.18658.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18658 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095B15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095B15, full insert sequence.
FL= gb:AK120422.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3659011/11K+ efflux antiporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36540NANA6+21467041..21471254retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g36550Os.45173.1.S1_x_at1/116+21471521..21473456retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g36560Os.6345.1.S1_at11/116+21477477..21481449Inositol oxygenase, putative, expressed
LOC_Os06g36570NANA6+21482765..21483520Serine carboxypeptidase family protein
LOC_Os06g36580NANA6+21488769..21489242retrotransposon protein, putative, unclassified
LOC_Os06g36590Os.18658.1.S1_at11/116+21492258..21500374K+ efflux antiporter, putative, expressed
LOC_Os06g36600NANA6+21506291..21506987hypothetical protein
LOC_Os06g36620NANA6+21515350..21516699retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g36630NANA6+21519844..21520536hypothetical protein
LOC_Os06g36640OsAffx.9860.1.S1_x_at1/116+21523966..21530876transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0015079molecular_functionpotassium ion transporter activity
GO:0015386molecular_functionpotassium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18658.1.S1_at--49--9631Chr06:21499805..21499829 (25 bp)
TCATGACATATTTTGGCACCACGCA
LOC_Os06g36590
Os.18658.1.S1_at--315--10091Chr06:21499851..21499875 (25 bp)
TATGGCTTACGCTAAACAGCTCCAC
LOC_Os06g36590
Os.18658.1.S1_at--282--1111Chr06:21499906..21499930 (25 bp)
AGTGTTTGTACCACACATGCACGGC
LOC_Os06g36590
Os.18658.1.S1_at--75--3411Chr06:21500062..21500086 (25 bp)
CAGCATACCTGCCTTGGGATGAATG
LOC_Os06g36590
Os.18658.1.S1_at--327--9111Chr06:21500093..21500117 (25 bp)
TGCTGCATCGCTCGCTGGAAATTTG
LOC_Os06g36590
Os.18658.1.S1_at--46--7811Chr06:21500213..21500237 (25 bp)
GGTCGTTACCATGCCATTGTATTCA
LOC_Os06g36590
Os.18658.1.S1_at--978--6871Chr06:21500231..21500255 (25 bp)
GTATTCATTTTGTCAGCGCTTGTGT
LOC_Os06g36590
Os.18658.1.S1_at--346--10831Chr06:21500250..21500274 (25 bp)
TTGTGTACGCGTTTCTCATCGCGAA
LOC_Os06g36590
Os.18658.1.S1_at--82--3551Chr06:21500266..21500290 (25 bp)
CATCGCGAATTTTGCTGTGTAGTTT
LOC_Os06g36590
Os.18658.1.S1_at--70--3591Chr06:21500310..21500334 (25 bp)
CATTATCTAACCTTGTCCGTTTCTA
LOC_Os06g36590
Os.18658.1.S1_at--708--7251Chr06:21500324..21500348 (25 bp)
GTCCGTTTCTATTACTGACTTCGAA
LOC_Os06g36590
Target Sequence 
TCATGACATATTTTGGCACCACGCAAAAGGCTTACTACTTTTTAAGTATGGCTTACGCTAAACAGCTCCACATTGTAAAG
TGTTTTTTCGCATGTACGAAAAGTGTTTGTACCACACATGCACGGCCGTGGAACCTGTGGAGTGGAGTGGAGGCAAAAGA
AATCAATCAATCTCNGTTTCGGTTGTCTTGGGATAGATTGATCTGCGAGTGGTGCAATGGGCAATAGAGTTTGCCGGTTT
TGGGAGGAGAGCAGCATGCAGCATACCTGCCTTGGGATGAATGGCGGTGTGCTGCATCGCTCGCTGGAAATTTGAGTGTG
TAAACCCCACAAATGAGGGTTTTCTATGTAACATAACAATGTATGCTGATTAATTGATTGGATTAGCGAGATAGGGTTTA
GTTTGGCTTGGTCGTTACCATGCCATTGTATTCATTTTGTCAGCGCTTGTGTACGCGTTTCTCATCGCGAATTTTGCTGT
GTAGTTTGTAACTAGTGACCTTTTACCATTATCTAACCTTGTCCGTTTCTATTACTGACTTCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18658.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis