Browse Element(s) Details


OsAffx.24523.1.S1_at

Description tigr:9630.m03000
TID=OsAffx.24523.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3125011/11expressed protein
LOC_Os01g495901/11receptor serine/threonine kinase PR5K, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31220Os.4783.1.S1_a_at11/112+18699833..18706481expressed protein
LOC_Os02g31220Os.20810.3.S1_x_at1/112+18699833..18706481expressed protein
LOC_Os02g31220OsAffx.28409.1.S1_at1/112+18699833..18706481expressed protein
LOC_Os02g31230Os.54546.1.S1_at10/112+18708235..18712077expressed protein
LOC_Os02g31230Os.57340.1.S1_at10/112+18708235..18712077expressed protein
LOC_Os02g31240OsAffx.2818.1.S1_at11/112+18721204..18721986hypothetical protein
LOC_Os02g31250OsAffx.24523.1.S1_at11/112+18723019..18724337expressed protein
LOC_Os02g31259OsAffx.8939.1.S1_at3/112+18734895..18735214NA
LOC_Os02g31259OsAffx.8939.1.S1_x_at3/112+18734895..18735214NA
LOC_Os02g31259OsAffx.1436.1.S1_x_at1/112+18734895..18735214NA
LOC_Os02g31270NANA2+18735909..18736814hypothetical protein
LOC_Os02g31280OsAffx.12912.1.S1_at4/112+18740846..18741956hypothetical protein
LOC_Os02g31280OsAffx.12308.1.S1_at2/112+18740846..18741956hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24523.1.S1_at--948--10131Chr02:18723194..18723218 (25 bp)
TATGCCATCCAAACATCCATCGAGA
LOC_Os02g31250
OsAffx.24523.1.S1_at--422--2093Chr02:18723206..18723230 (25 bp)
ACATCCATCGAGAAAATAGCGGTTA
LOC_Os02g31250
OsAffx.24523.1.S1_at--612--5371Chr02:18723234..18723258 (25 bp)
GAAGAAAAACGTCCTCCAGCAGATA
LOC_Os02g31250
OsAffx.24523.1.S1_at--517--3811Chr02:18723259..18723283 (25 bp)
CTCCATCCCACCATACAAATTTAAT
LOC_Os02g31250
OsAffx.24523.1.S1_at--463--9771Chr02:18723280..18723304 (25 bp)
TAATGCATCCTCTATTTGGCAGAGA
LOC_Os02g31250
OsAffx.24523.1.S1_at--944--2852Chr06:5690496..5690587 (25 bp)
AAGTGCCAAATTTGGCGTTCCTCTC
NONE
OsAffx.24523.1.S1_at--879--2231Chr02:18723367..18723391 (25 bp)
AAATTACCGCCCTCATCCAGATCAA
LOC_Os02g31250
OsAffx.24523.1.S1_at--984--5251Chr02:18723418..18723442 (25 bp)
GAATCGACTCCTCTCAGAGACTGGG
LOC_Os02g31250
OsAffx.24523.1.S1_at--797--3814Chr02:18723425..18723449 (25 bp)
CTCCTCTCAGAGACTGGGTGGTGGT
LOC_Os02g31250
OsAffx.24523.1.S1_at--80--2791Chr02:18723509..18723533 (25 bp)
AAGAGAGGCATATCGGAAGGACAGT
LOC_Os02g31250
OsAffx.24523.1.S1_at--884--8191Chr02:18723523..18723547 (25 bp)
GGAAGGACAGTGTCACCGCTTGCAT
LOC_Os02g31250
Target Sequence 
TATGCCATCCAAACATCCATCGAGAAAATAGCGGTTAGGAGAAGAAAAACGTCCTCCAGCAGATACTCCATCCCACCATA
CAAATTTAATGCATCCTCTATTTGGCAGAGAAAAGTGCCAAATTTGGCGTTCCTCTCTCCTCATGCCATCCCGCAACTGC
CAGCACCCAAACCAAATTACCGCCCTCATCCAGATCAATGCCCCGTCCCGGCCTTGCCCCATCCGAATCGACTCCTCTCA
GAGACTGGGTGGTGGTGGCGGTGGGCCATCGGCGGGAGGAGGAGGGAGATGGACTTGCCAGGAGGAGGGTGGAGAAAGAG
AGGCATATCGGAAGGACAGTGTCACCGCTTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis