Browse Element(s) Details


OsAffx.2818.1.S1_at

Description tigr:9630.m02999
TID=OsAffx.2818.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3124011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31220Os.4783.1.S1_a_at11/112+18699833..18706481expressed protein
LOC_Os02g31220Os.20810.3.S1_x_at1/112+18699833..18706481expressed protein
LOC_Os02g31220OsAffx.28409.1.S1_at1/112+18699833..18706481expressed protein
LOC_Os02g31230Os.54546.1.S1_at10/112+18708235..18712077expressed protein
LOC_Os02g31230Os.57340.1.S1_at10/112+18708235..18712077expressed protein
LOC_Os02g31240OsAffx.2818.1.S1_at11/112+18721204..18721986hypothetical protein
LOC_Os02g31250OsAffx.24523.1.S1_at11/112+18723019..18724337expressed protein
LOC_Os02g31259OsAffx.8939.1.S1_at3/112+18734895..18735214NA
LOC_Os02g31259OsAffx.8939.1.S1_x_at3/112+18734895..18735214NA
LOC_Os02g31259OsAffx.1436.1.S1_x_at1/112+18734895..18735214NA
LOC_Os02g31270NANA2+18735909..18736814hypothetical protein
LOC_Os02g31280OsAffx.12912.1.S1_at4/112+18740846..18741956hypothetical protein
LOC_Os02g31280OsAffx.12308.1.S1_at2/112+18740846..18741956hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2818.1.S1_at--33--7771Chr02:18721259..18721283 (25 bp)
GGTGCAAGAGGCAAGGCACACAATT
LOC_Os02g31240
OsAffx.2818.1.S1_at--1115--8231Chr02:18721273..18721297 (25 bp)
GGCACACAATTTGGCACTGGCAGGA
LOC_Os02g31240
OsAffx.2818.1.S1_at--488--4251Chr02:18721684..18721706 (23 bp)
CCGGTTGGTGGTGCATGAAGCTCCT
LOC_Os02g31240
OsAffx.2818.1.S1_at--232--2691Chr02:18721699..18721723 (25 bp)
AAGCTCCTGTGGCACAACCTTTGGT
LOC_Os02g31240
OsAffx.2818.1.S1_at--87--6071Chr02:18721728..18721752 (25 bp)
GAGTTCGGATGGAGTCGGATCTACT
LOC_Os02g31240
OsAffx.2818.1.S1_at--1051--9431Chr02:18721742..18721833 (25 bp)
TCGGATCTACTTGACCAGGTGGTCT
LOC_Os02g31240
OsAffx.2818.1.S1_at--670--1051Chr02:18721825..18721849 (25 bp)
AGGTGGTCTCCTGACGTCATTGTGT
LOC_Os02g31240
OsAffx.2818.1.S1_at--320--9271Chr02:18721833..18721857 (25 bp)
TCCTGACGTCATTGTGTGTTGGTGT
LOC_Os02g31240
OsAffx.2818.1.S1_at--152--1071Chr02:18721885..18721909 (25 bp)
AGGGATGGCAAACTCGGCAACGACA
LOC_Os02g31240
OsAffx.2818.1.S1_at--538--10671Chr02:18721916..18721940 (25 bp)
TTCCACTTTCATCTTGGCAGTGCTG
LOC_Os02g31240
OsAffx.2818.1.S1_at--907--5011Chr02:18721932..18721956 (25 bp)
GCAGTGCTGTAACGGCCTTGGTTTT
LOC_Os02g31240
Target Sequence 
GGTGCAAGAGGCAAGGCACACAATTTGGCACTGGCAGGAGGAGGCTGGCGAGGTGGTCGGCGGGGTGTAGTAGGTGCCGG
TTGGTGGTGCATGAAGCTCCTGTGGCACAACCTTTGGTTGATGAGTTCGGATGGAGTCGGATCTACTTGACCAGGTGGTC
TCCTGACGTCATTGTGTGTTGGTGTGTTGGGATGGAGTCGGAGCTGTTTGCAAGGGATGGCAAACTCGGCAACGACAACC
CTCTTCCACTTTCATCTTGGCAGTGCTGTAACGGCCTTGGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2818.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis