Browse Element(s) Details


Os.4783.1.S1_a_at

Description gb:AK067500.1
DB_XREF= gi:32977518
TID=Os.4783.1
CNT=38
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.4783 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033095B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111P10, full insert sequence.
FL= gb:AK067500.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3122011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31190Os.46012.2.S1_x_at9/112+18672422..18678375retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g31190Os.46012.3.S1_x_at7/112+18672422..18678375retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g31190Os.27088.1.A1_x_at5/112+18672422..18678375retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g31190Os.54691.1.S1_x_at1/112+18672422..18678375retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g31200OsAffx.2817.1.S1_at8/112+18685109..18685599hypothetical protein
LOC_Os02g31210OsAffx.12307.1.S1_at11/112+18687178..18688101hypothetical protein
LOC_Os02g31220Os.4783.1.S1_a_at11/112+18699833..18706481expressed protein
LOC_Os02g31220Os.20810.3.S1_x_at1/112+18699833..18706481expressed protein
LOC_Os02g31220OsAffx.28409.1.S1_at1/112+18699833..18706481expressed protein
LOC_Os02g31230Os.54546.1.S1_at10/112+18708235..18712077expressed protein
LOC_Os02g31230Os.57340.1.S1_at10/112+18708235..18712077expressed protein
LOC_Os02g31240OsAffx.2818.1.S1_at11/112+18721204..18721986hypothetical protein
LOC_Os02g31250OsAffx.24523.1.S1_at11/112+18723019..18724337expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4783.1.S1_a_at--56--1412Chr02:18705546..18705570 (25 bp)
AGACATGCATAACCCCTTCATAAGG
LOC_Os02g31220
Os.4783.1.S1_a_at--599--4572Chr02:18709812..18709836 (25 bp)
GCGAATTTTAGCTTTTAACATAACA
NONE
Os.4783.1.S1_a_at--951--9811Chr02:18705787..18705811 (25 bp)
TAACATTCATATGCTCCCAGTGAAG
LOC_Os02g31220
Os.4783.1.S1_a_at--981--5252Chr02:18709859..18709883 (25 bp)
GACATCCAAGACTAGTGGGTTTAGC
NONE
Os.4783.1.S1_a_at--2--3471Chr02:18705841..18705865 (25 bp)
CAGTGGTTGTACAGGCTCTGGTACT
LOC_Os02g31220
Os.4783.1.S1_a_at--854--8311Chr02:18705854..18705878 (25 bp)
GGCTCTGGTACTTTGAGGCCTTCCT
LOC_Os02g31220
Os.4783.1.S1_a_at--923--8191Chr02:18705899..18705923 (25 bp)
GGAAGGTTCCTAGCGTCAAGTGCGT
LOC_Os02g31220
Os.4783.1.S1_a_at--173--4031Chr02:18705912..18705936 (25 bp)
CGTCAAGTGCGTAGTAGTCTGGTCT
LOC_Os02g31220
Os.4783.1.S1_a_at--1019--6931Chr02:18705925..18705949 (25 bp)
GTAGTCTGGTCTTATCATGTTTTAA
LOC_Os02g31220
Os.4783.1.S1_a_at--255--7751Chr02:18705983..18706007 (25 bp)
GGTGATGTTTGTTAGGTTTCTGGAA
LOC_Os02g31220
Os.4783.1.S1_a_at--200--9231Chr02:18706042..18706066 (25 bp)
TCCAGGTACCTACTGACACTATAGT
LOC_Os02g31220
Target Sequence 
AGACATGCATAACCCCTTCATAAGGTAAGGTTGTGTGAGCTTGGAGAAAGTTCCATTTGCTCAGGAAAAAATAGCCTTCA
GATTGTGACTTTAGGCTTCAGATTAATCTCATAGACCAACAATCTCCTTTCTGTGGGTCATTTATATAGCACCCACCTGA
TATGCATATGTACATGCACTGTTGTAACACTATGCAGGGATGAACTAGCCGTCTCGTTGGGGCGAATTTTAGCTTTTAAC
ATAACATTCATATGCTCCCAGTGAAGAAGACATCCAAGACTAGTGGGTTTAGCAGCAGTGGTTGTACAGGCTCTGGTACT
TTGAGGCCTTCCTGTCTGTCTTTTTACTAGTGTGGAAGGTTCCTAGCGTCAAGTGCGTAGTAGTCTGGTCTTATCATGTT
TTAATTAGGATCAAAAGTGTGTTGGGGATAATGAAGTGGTGATGTTTGTTAGGTTTCTGGAAAGATATTTAAAATGTCAT
GGAGATGGCCAGTGTTTCCAGGTACCTACTGACACTATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4783.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis