Browse Element(s) Details


Os.54546.1.S1_at

Description gb:AK105573.1
DB_XREF= gi:32990782
TID=Os.54546.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54546 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-D04, full insert sequence.
FL= gb:AK105573.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3123010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31200OsAffx.2817.1.S1_at8/112+18685109..18685599hypothetical protein
LOC_Os02g31210OsAffx.12307.1.S1_at11/112+18687178..18688101hypothetical protein
LOC_Os02g31220Os.4783.1.S1_a_at11/112+18699833..18706481expressed protein
LOC_Os02g31220Os.20810.3.S1_x_at1/112+18699833..18706481expressed protein
LOC_Os02g31220OsAffx.28409.1.S1_at1/112+18699833..18706481expressed protein
LOC_Os02g31230Os.54546.1.S1_at10/112+18708235..18712077expressed protein
LOC_Os02g31230Os.57340.1.S1_at10/112+18708235..18712077expressed protein
LOC_Os02g31240OsAffx.2818.1.S1_at11/112+18721204..18721986hypothetical protein
LOC_Os02g31250OsAffx.24523.1.S1_at11/112+18723019..18724337expressed protein
LOC_Os02g31259OsAffx.8939.1.S1_at3/112+18734895..18735214NA
LOC_Os02g31259OsAffx.8939.1.S1_x_at3/112+18734895..18735214NA
LOC_Os02g31259OsAffx.1436.1.S1_x_at1/112+18734895..18735214NA
LOC_Os02g31270NANA2+18735909..18736814hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54546.1.S1_at--865--7951Chr02:18711105..18711129 (25 bp)
GGATAACACCCAAGCTATTTTTGGT
LOC_Os02g31230
Os.54546.1.S1_at--1114--3231Chr02:18711095..18711119 (25 bp)
CAAGCTATTTTTGGTTGCCCGGATG
LOC_Os02g31230
Os.54546.1.S1_at--861--10851Chr02:18711085..18711109 (25 bp)
TTGGTTGCCCGGATGGAGTATCTGT
LOC_Os02g31230
Os.54546.1.S1_at--1029--10691Chr02:18711081..18711105 (25 bp)
TTGCCCGGATGGAGTATCTGTTGGA
LOC_Os02g31230
Os.54546.1.S1_at--989--471Chr02:18711066..18711090 (25 bp)
ATCTGTTGGAGACTGACTTTCATTT
LOC_Os02g31230
Os.54546.1.S1_at--371--5991Chr02:18711058..18711082 (25 bp)
GAGACTGACTTTCATTTCCAATATG
LOC_Os02g31230
Os.54546.1.S1_at--842--5691Chr02:18711052..18711076 (25 bp)
GACTTTCATTTCCAATATGCCATTT
LOC_Os02g31230
Os.54546.1.S1_at--253--4391Chr02:18711041..18711065 (25 bp)
CCAATATGCCATTTTCAGGATGATG
LOC_Os02g31230
Os.54546.1.S1_at--389--5471NONE
GAACTGTTTGATTGCAAGCGCGCCC
NONE
Os.54546.1.S1_at--889--6251Chr02:18709124..18709148 (25 bp)
GATGGGCACGGACGCCTTGACTCGT
LOC_Os02g31230
Os.54546.1.S1_at--430--1031Chr02:18708903..18708927 (25 bp)
AGTGCTAAACGATACGTTTCGTGTA
LOC_Os02g31230
Target Sequence 
GGATAACACCCAAGCTATTTTTGGTTGCCCGGATGGAGTATCTGTTGGAGACTGACTTTCATTTCCAATATGCCATTTTC
AGGATGATGGGATGGAGTATTTGGTGAGGATGCTCTTATGGTCTCAAAACCATTCCGTCCCTCAACTGTAGAACTGTTTG
ATTGCAAGCGCGCCCCTCGCCGGCGCCGCGGCAGCGCCGTCGGTGGTGGTGCGGTTGAGGAGCTCGCGGTTCTCCTTCCA
GACCTCACCGTCGTCGTACACCTCCTTCTTCCAGATGGGCACGGACGCCTTGACTCGTCGATGACGTAGCGGCACGCCTC
CATCGCGTCGGCGCGGTGCACCGCGGACGCCGCCACGAACACGCTCGCCTCCCCCGCGGGGACCGCCCCGAGCCGGTGCG
CCACGGCGAGCCGCCGCAGCAGCAGGGGGCGGCGGGCGGCGCGGGCCTCGCGGACGATGGCGGATAGCCGGCGCCGTCGT
GGCACGCTTTTCAAAGTGCTAAACGATACGTTTCGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54546.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis